DreEX0032069 @ danRer10
Exon Skipping
Gene
ENSDARG00000078468 | fap
Description
fibroblast activation protein, alpha [Source:ZFIN;Acc:ZDB-GENE-081104-439]
Coordinates
chr9:51696731-51699776:+
Coord C1 exon
chr9:51696731-51696823
Coord A exon
chr9:51696916-51697010
Coord C2 exon
chr9:51699702-51699776
Length
95 bp
Sequences
Splice sites
3' ss Seq
TTTGTCTCATTATCCAACAGACA
3' ss Score
8.91
5' ss Seq
TTTGTAGGT
5' ss Score
1.17
Exon sequences
Seq C1 exon
GAGATGATTCTGCATTAAAGAGGACGTACTCTTTTGATGATTTTTACAATGACACTATCAGGTATAAAACATACAACCTCCGCTGGATATCAG
Seq A exon
ACAACGAATACCTCCACAAAACCAACGAAGGTCATATTTACTTGCATAACGCGGAAACAAAGGAAAGCTCAGTGTACCTGAGCAACTCAACATTT
Seq C2 exon
GCCCAAGTGGATGCCACAGATTACATTTTATCAGCAGACAGAAAATTTGCAGCCTTCGAGAGCAATTACTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078468-'2-3,'2-2,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0093016=DPPIV_N=PU(3.9=56.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGATTCTGCATTAAAGAGGACGT
R:
CTTTGAGTAATTGCTCTCGAAGGC
Band lengths:
167-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]