MmuEX0010877 @ mm9
Exon Skipping
Gene
ENSMUSG00000057110 | Cep110
Description
centrosomal protein 110 [Source:MGI Symbol;Acc:MGI:1889576]
Coordinates
chr2:34968844-34973716:+
Coord C1 exon
chr2:34968844-34968974
Coord A exon
chr2:34972192-34972322
Coord C2 exon
chr2:34973575-34973716
Length
131 bp
Sequences
Splice sites
3' ss Seq
TACCCTTTATTTCCAATTAGTAC
3' ss Score
5.38
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GAGCTGAGTCATATGTAGGAGTCCGGTATATTACAGAAGCCCTCATCAAAAAACTCACTAAACAGGACAATTTGGCCTTGGTGAAGTCTCTGAATCTTTCACTTTCTAAAGATGGCGGCAAGAAATTTAGG
Seq A exon
TACATCGAAAATTTGGAAAAGTGTGTTAAACTTGAAGTACTAAATCTCAGCTATAATCTAATAGTGAAGATAGAGAAAGTGGACAAGCTGTTACGATTACGTGAACTCAACTTATCATATAACAAAATCAG
Seq C2 exon
CAAAATTGAAGGACTAGAAAACATGTGTAACCTGCAGAAGCTAAACCTAGCAGGTAATGAAATCGAGCATATTCCAGTGTGGTTCGCAAAGAAATTGAAATCTTTACGAGTCCTCAATCTGAAAGGCAATAAGATATCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057110_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF145801=LRR_9=PU(25.8=95.5)
C2:
PF145801=LRR_9=FE(28.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTCATATGTAGGAGTCCGGT
R:
GCCTTTCAGATTGAGGACTCGT
Band lengths:
254-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: