GgaEX0026790 @ galGal4
Exon Skipping
Gene
ENSGALG00000001513 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr17:8346524-8348546:+
Coord C1 exon
chr17:8346524-8346657
Coord A exon
chr17:8347171-8347301
Coord C2 exon
chr17:8348405-8348546
Length
131 bp
Sequences
Splice sites
3' ss Seq
GTAAATTTTCTGTTCTTCAGTAC
3' ss Score
5.5
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
AGGAAAATGGTGTTAGTCCAGGTGTTCGGTACATTACAGAACCCCTTATTAAAAGTCTGTCAAAACAGGAAAATTTGGCATATATAAGCTCACTGAATCTTTCTTCACCAAAGGATGGGGACAAGAAATTCAAA
Seq A exon
TACATAGAAAATTTGGAAAAATGCTCTAAACTAGAGAGACTGAATCTAAGTAACAATCAAATAGAGAAGATTGAAAAGCTGGATAAACTGTTGAAGTTACGTGAACTCAATTTGTCTTATAACAAGATCAG
Seq C2 exon
TAAGATTGAAGGTATGGAACATTTACATAACCTACAAAAGATGAACCTTGCAGGGAATGAGATTGAGCATATTCCTGTGTGGGTAGGGAAGAAACTGAGATCCCTGCGCATCCTTAATTTGAAACAGAATAAAGTATCATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001513_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.122 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127992=LRR_4=PU(53.1=75.6)
A:
PF127992=LRR_4=PD(43.8=63.6),PF138551=LRR_8=PU(20.7=27.3)
C2:
PF138551=LRR_8=PD(77.6=93.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGTTAGTCCAGGTGTTCGG
R:
TAAGGATGCGCAGGGATCTCA
Band lengths:
242-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]