RnoEX6016595 @ rn6
Exon Skipping
Gene
ENSRNOG00000022015 | Cntrl
Description
centriolin [Source:RGD Symbol;Acc:1305317]
Coordinates
chr3:14306558-14311257:+
Coord C1 exon
chr3:14306558-14306688
Coord A exon
chr3:14309590-14309720
Coord C2 exon
chr3:14311116-14311257
Length
131 bp
Sequences
Splice sites
3' ss Seq
TACCATTTATTTCCAATTAGTAC
3' ss Score
4.74
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GAGCTGATCCATACGTAGGAGTCCGGTATATTACAGAGGCCCTCATCAAAAAACTCACTAAACAGGACAATTTGGCCTTGGTGAAGTCTCTGAATCTTTCACTTTCTAAAGATGGTGGCAAGAAATTTAGG
Seq A exon
TACATCGAAAATCTGGAAAAGTGTGTTAAACTTGAAGTTCTAAATCTCAGCTATAATCTAATAGCGAAGATAGAGAAAGTGGACAAGCTGTTACGATTACGTGAACTCAACTTATCGTATAACAAAATCAG
Seq C2 exon
TAAGATTGAAGGACTAGAAAACATGTGTAACCTGCAAAAGCTAAACCTAGCAGGTAATGAAATCGAGCACATTCCTGGGTGGTTCTCAAAGAAACTGAAGTCTTTGCGAGTCCTCAATCTGAAAGGCAATAAGATATCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022015-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF145801=LRR_9=PU(25.3=93.2)
C2:
PF145801=LRR_9=FE(29.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCATACGTAGGAGTCCGGT
R:
GCCTTTCAGATTGAGGACTCGC
Band lengths:
252-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]