HsaEX0014653 @ hg19
Exon Skipping
Gene
ENSG00000119397 | CEP110
Description
centriolin [Source:HGNC Symbol;Acc:1858]
Coordinates
chr9:123852553-123858841:+
Coord C1 exon
chr9:123852553-123852683
Coord A exon
chr9:123857166-123857296
Coord C2 exon
chr9:123858700-123858841
Length
131 bp
Sequences
Splice sites
3' ss Seq
ATTCATTTGTTTCCAATTAGTAT
3' ss Score
5.5
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GAGCTGATTCACATGCAGGAGTTAGATATATTACAGAGGCCCTCATTAAAAAACTTACTAAACAGGATAATTTGGCTTTGATAAAATCTCTGAACCTTTCACTTTCTAAAGACGGTGGCAAGAAATTTAAG
Seq A exon
TATATTGAGAATTTGGAAAAATGTGTTAAACTTGAAGTACTGAATCTCAGCTATAATCTAATAGGGAAGATTGAAAAGTTGGACAAGCTGTTAAAATTACGTGAACTCAACTTATCATATAACAAAATCAG
Seq C2 exon
CAAAATTGAAGGCATAGAAAATATGTGTAATCTGCAAAAGCTTAACCTTGCAGGAAATGAAATTGAGCATATTCCAGTATGGTTAGGGAAGAAGTTAAAATCTTTGCGAGTCCTCAATTTGAAAGGCAACAAGATATCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119397_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF145801=LRR_9=PU(0.1=0.0)
A:
PF145801=LRR_9=FE(26.1=100)
C2:
PF145801=LRR_9=FE(28.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGATTCACATGCAGGAGT
R:
GCCTTTCAAATTGAGGACTCGC
Band lengths:
257-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)