DreEX6014109 @ danRer10
Exon Skipping
Gene
ENSDARG00000088492 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr5:62760016-62760820:-
Coord C1 exon
chr5:62760690-62760820
Coord A exon
chr5:62760462-62760592
Coord C2 exon
chr5:62760016-62760157
Length
131 bp
Sequences
Splice sites
3' ss Seq
ATATTGTACTGTGTTTTCAGTAT
3' ss Score
6.44
5' ss Seq
ACAGTAAGA
5' ss Score
5.96
Exon sequences
Seq C1 exon
ACAAAAGGCAATATAAGGGAACCAGATACATCACAGAAGATCTGATCAGGAGAGTGACTAAATGCGAAAATGTAGTTCTTGTGCGGACCCTGGATCTGTCTATGGCAATGGGGAGCAACCATCAATTTAGG
Seq A exon
TATATAGAAAATTTGGATAAGTGTGATCGCCTGCAGGTCCTCAACCTCAGCAACAACAGGATTGAGAGAATTGAGAAACTAGAGAAACTGTGTCAGTTACGGGAGCTTCACCTTTCCAGAAACAGAATACA
Seq C2 exon
TAAAATTGAAGGTCTGGAACACATGACAAAACTTCAGGTTCTGAATTTAGCATTCAACAACATTGAAGATCTCCCAGTTTGGTTTGGAAAGAAGCTCAGATCCCTTCAGACCGTCAATCTACAGAGCAACAATATATCCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088492-'1-4,'1-3,2-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.114 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF145801=LRR_9=PU(23.1=81.8)
C2:
PF145801=LRR_9=FE(30.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACCAGATACATCACAGAAGA
R:
TGCTCTGTAGATTGACGGTCTGA
Band lengths:
242-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]