HsaEX0014653 @ hg38
Exon Skipping
Gene
ENSG00000119397 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr9:121090275-121096563:+
Coord C1 exon
chr9:121090275-121090405
Coord A exon
chr9:121094888-121095018
Coord C2 exon
chr9:121096422-121096563
Length
131 bp
Sequences
Splice sites
3' ss Seq
ATTCATTTGTTTCCAATTAGTAT
3' ss Score
5.5
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GAGCTGATTCACATGCAGGAGTTAGATATATTACAGAGGCCCTCATTAAAAAACTTACTAAACAGGATAATTTGGCTTTGATAAAATCTCTGAACCTTTCACTTTCTAAAGACGGTGGCAAGAAATTTAAG
Seq A exon
TATATTGAGAATTTGGAAAAATGTGTTAAACTTGAAGTACTGAATCTCAGCTATAATCTAATAGGGAAGATTGAAAAGTTGGACAAGCTGTTAAAATTACGTGAACTCAACTTATCATATAACAAAATCAG
Seq C2 exon
CAAAATTGAAGGCATAGAAAATATGTGTAATCTGCAAAAGCTTAACCTTGCAGGAAATGAAATTGAGCATATTCCAGTATGGTTAGGGAAGAAGTTAAAATCTTTGCGAGTCCTCAATTTGAAAGGCAACAAGATATCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119397_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF145801=LRR_9=PU(0.1=0.0)
A:
PF145801=LRR_9=FE(26.1=100)
C2:
PF145801=LRR_9=FE(28.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGATTCACATGCAGGAGT
R:
GCCTTTCAAATTGAGGACTCGC
Band lengths:
257-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development