GgaEX0026790 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr17:9050263-9052466:+
Coord C1 exon
chr17:9050263-9050396
Coord A exon
chr17:9050910-9051040
Coord C2 exon
chr17:9052144-9052466
Length
131 bp
Sequences
Splice sites
3' ss Seq
GTAAATTTTCTGTTCTTCAGTAC
3' ss Score
5.5
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
AGGAAAATGGTGTTAGTCCAGGTGTTCGGTACATTACAGAACCCCTTATTAAAAGTCTGTCAAAACAGGAAAATTTGGCATATATAAGCTCACTGAATCTTTCTTCACCAAAGGATGGGGACAAGAAATTCAAA
Seq A exon
TACATAGAAAATTTGGAAAAATGCTCTAAACTAGAGAGACTGAATCTAAGTAACAATCAAATAGAGAAGATTGAAAAGCTGGATAAACTGTTGAAGTTACGTGAACTCAATTTGTCTTATAACAAGATCAG
Seq C2 exon
TAAGATTGAAGGTATGGAACATTTACATAACCTACAAAAGATGAACCTTGCAGGGAATGAGATTGAGCATATTCCTGTGTGGGTAGGGAAGAAACTGAGATCCCTGCGCATCCTTAATTTGAAACAGAATAAAGTATCATCAGTAAGTGATTATAATTAAGGAACAGTCTTTTCATGAACTGGTAAATTTATATTGTTTGACCTACTCTGAATTACTCAGTGTCTTTCAGTTGTCAGTACAGTTGTGAGCCTAACAAAGCTGGTTTTTAAGGAGAAACTCTGCTGCTGTTCCACATATTCAAAGCATAAATATACTTTGTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023483_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.111 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127992=LRR_4=PU(14.3=11.1)
A:
PF127992=LRR_4=PD(80.0=63.6),PF138551=LRR_8=PU(20.7=27.3)
C2:
PF138551=LRR_8=PD(77.6=83.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGTTAGTCCAGGTGTTCGG
R:
TAAGGATGCGCAGGGATCTCA
Band lengths:
242-373
Functional annotations
There are 0 annotated functions for this event