BtaEX6036319 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011417 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr8:112419428-112427462:+
Coord C1 exon
chr8:112419428-112419558
Coord A exon
chr8:112425812-112425942
Coord C2 exon
chr8:112427321-112427462
Length
131 bp
Sequences
Splice sites
3' ss Seq
ATTCATTTGTTTCCAATTAGTAT
3' ss Score
5.5
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
AAGCTGATTCACATGCAGGAGTTCGATATATTACAGAAGCCCTTGTTAAAAAACTTACTAAACAGGAAAATTTGGCCTTGGTAAAATCTCTGAACCTTTCACTTTCCAAAGATGGTGGCAAGAAATTTAAG
Seq A exon
TATATCGAAAATTTGGAAAAATGTACTAAGCTTGAAATACTGAATCTCAGCCATAATCTAATAGGGAAGATTGAGAAGGTGGACAAGCTGTTAAAGTTACGTGAACTCAACCTATCATATAACAAAATCTG
Seq C2 exon
CAAAATTGAAGGCATAGAAAATCTGCACAATCTACAAAAGCTGAACCTTGCAGGAAATGAAATTGAGCATATTCCAGCGTGGTTAGGGAAGAAGTTAAAATGTTTGCGAGTCCTCAATCTGAAAGCCAACAAGATATCATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011417-'2-7,'2-5,4-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127992=LRR_4=PU(34.7=38.6)
A:
PF127992=LRR_4=PD(61.2=68.2),PF145801=LRR_9=PU(24.8=90.9)
C2:
PF145801=LRR_9=FE(29.2=100)
Main Skipping Isoform:
ENSBTAT00000061592fB1816
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGATTCACATGCAGGAGT
R:
GCTTTCAGATTGAGGACTCGCA
Band lengths:
256-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]