MmuEX0010877 @ mm10
Exon Skipping
Gene
ENSMUSG00000057110 | Cntrl
Description
centriolin [Source:MGI Symbol;Acc:MGI:1889576]
Coordinates
chr2:35113324-35118196:+
Coord C1 exon
chr2:35113324-35113454
Coord A exon
chr2:35116672-35116802
Coord C2 exon
chr2:35118055-35118196
Length
131 bp
Sequences
Splice sites
3' ss Seq
TACCCTTTATTTCCAATTAGTAC
3' ss Score
5.38
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GAGCTGAGTCATATGTAGGAGTCCGGTATATTACAGAAGCCCTCATCAAAAAACTCACTAAACAGGACAATTTGGCCTTGGTGAAGTCTCTGAATCTTTCACTTTCTAAAGATGGCGGCAAGAAATTTAGG
Seq A exon
TACATCGAAAATTTGGAAAAGTGTGTTAAACTTGAAGTACTAAATCTCAGCTATAATCTAATAGTGAAGATAGAGAAAGTGGACAAGCTGTTACGATTACGTGAACTCAACTTATCATATAACAAAATCAG
Seq C2 exon
CAAAATTGAAGGACTAGAAAACATGTGTAACCTGCAGAAGCTAAACCTAGCAGGTAATGAAATCGAGCATATTCCAGTGTGGTTCGCAAAGAAATTGAAATCTTTACGAGTCCTCAATCTGAAAGGCAATAAGATATCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057110_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF145801=LRR_9=PU(25.8=95.5)
C2:
PF138551=LRR_8=PD(77.6=93.8)
Main Skipping Isoform:
ENSMUST00000028237fB8000
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTCATATGTAGGAGTCCGGT
R:
GCCTTTCAGATTGAGGACTCGT
Band lengths:
254-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types