GgaINT0124264 @ galGal4
Intron Retention
Gene
ENSGALG00000001513 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr17:8347171-8348546:+
Coord C1 exon
chr17:8347171-8347301
Coord A exon
chr17:8347302-8348404
Coord C2 exon
chr17:8348405-8348546
Length
1103 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
TTATGTTTTCTTCTTTTCAGTAA
3' ss Score
9.39
Exon sequences
Seq C1 exon
TACATAGAAAATTTGGAAAAATGCTCTAAACTAGAGAGACTGAATCTAAGTAACAATCAAATAGAGAAGATTGAAAAGCTGGATAAACTGTTGAAGTTACGTGAACTCAATTTGTCTTATAACAAGATCAG
Seq A exon
GTAAGCAGAGATGCTTCTTATATTTTTGAAAACCCCAGATATGACAAAGCTGACACTCTCTTATTGTTTGAGTGGGATCTGAGAAGTATGAACAATTACATAGCATTTCCCATCAGTTACATGACAAGGGTGTAAAGCTTCAGTGAACTCTTATTTCATAGAAGCTTGTGACTTTTAATATCTTCAAAATGTTTTTGAAGGAGAAATAGTTTTGAAAAGTGCTGTATTATTATTTTGTATTATCAAAAGTTGAAGAGTAATGGTTCAAGCAATAGCAAAATTGTTTCCTTTAATTTTTTTTAATTAGTAACTTTGATCTTTATGTGGAATTGACTTTGTAGAGAAGTTGCAGTGTTGGTAGAGGAGTTAACAGCAGGAAGTAAACAAGCATTTCTACACACTTACATTCATACAACTTCCTCATTTAACAGGAATTGAAAAGGTCAGAGTAGCTTTTAGCTATTGCTGCATGTTCTCAGACTTTCGTTATAGGCAATTGGTTTCTACTTCAAAAATAGTAAGGCAACGAGCATTTTCTATCCCACTTTATGATACTCATCTCTTTAAATTAGTGCCCAAGGAAACTTGAACTCAGCATTTTCCTCATTAGCAGTTTAGTATTTTAATGAATATACTACAAAAGTAGCTCTTTACAGCATCAGTTTACAGTTGATTCTTGCTTTTATATGGAAAAATTAAATACGTTCATTTTGGTTCAGCTGTGTCATGCAAGTGTGCAATTATGTTTGCAGGATAAGAAGAGCAAAATGTGTATATTAAAATGGCATAATACATATGTAAATAAGTTTTTAATTTTATAGTGGAGAGGTGTAAAGTTGAGGACTTTGGTCACTGTAGTAAAACATTGCTGTAAAATTACTGGGTTTATTTATTCATAGCCTTACCATATGGTATGTGAAAGCAAGATATTCTCATTTTATTTGAACTGAGTCCACTGTTTGTTATGGTGTTTGTTACAGGGCTGTTTGCTCTTTCTTGAATGGTGATTAGTTGAAATAGATTTTCCATATCTTATCCATAGTGCCTCAATTGCACTGTAAATGTTATATGCTTCACAATGAGTTATGTTTTCTTCTTTTCAG
Seq C2 exon
TAAGATTGAAGGTATGGAACATTTACATAACCTACAAAAGATGAACCTTGCAGGGAATGAGATTGAGCATATTCCTGTGTGGGTAGGGAAGAAACTGAGATCCCTGCGCATCCTTAATTTGAAACAGAATAAAGTATCATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001513:ENSGALT00000002299:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127992=LRR_4=PD(43.8=63.6),PF138551=LRR_8=PU(20.7=27.3)
A:
NA
C2:
PF138551=LRR_8=PD(77.6=93.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAATAGAGAAGATTGAAAAGCTGG
R:
TATTCTGTTTCAAATTAAGGATGCGC
Band lengths:
206-1309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]