HsaINT0033507 @ hg19
Intron Retention
Gene
ENSG00000119397 | CEP110
Description
centriolin [Source:HGNC Symbol;Acc:1858]
Coordinates
chr9:123857166-123858841:+
Coord C1 exon
chr9:123857166-123857296
Coord A exon
chr9:123857297-123858699
Coord C2 exon
chr9:123858700-123858841
Length
1403 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTTTATCCTTTGCTTTCCAGCAA
3' ss Score
8.81
Exon sequences
Seq C1 exon
TATATTGAGAATTTGGAAAAATGTGTTAAACTTGAAGTACTGAATCTCAGCTATAATCTAATAGGGAAGATTGAAAAGTTGGACAAGCTGTTAAAATTACGTGAACTCAACTTATCATATAACAAAATCAG
Seq A exon
GTGAGTTATATAACAAAATCTTTAGGCAGCATTGCAGATAGCTTTGTTAGAGAGGTAGATTAATGTTATCCACATTACTGAAAGAATGATTTGACAGAAACAGAAGATATTTTTATCTTTATTCATCAATCAAATGAATGTCTGTCTCTTCACATATGGTAGGTAACTGTCTTTATGTTTTGGCATTACTGAAGTACAGAATAACATCTAGCATTATCAAAGAGATATATTTTTGAGCACCAAATTGTATCTTAATTTCATTTCTGACAGGAAGTTTTCCCAGATATTGTCTGTGATTTATTACCTTATTACATTAAGAATGTTGACATGAAGCAGAATGTTTTAACCCTGCCATTTTGACCCCCAAGATGTTCTAATCTGTTTTGATTCTGATGTTCTTTGCTTATTGCTACAAGAAATATGCTCTCAATCCTGTTTCCAATTCATAATATATATTACTGTGAGAAATAAACATACTAAAACTGACACTGGCTAAAACTTCATATAGAAAACTTGTTATAGACAAAATGATACAAGAATCAAATCTTGAAATTCTTAATATCTGCATGCTTTTCCCCCAAGTTAGACTTGGTAAATATGATGGCCAAGAAAATGACTAGCAATGGCAGAAGTTCTGATATGACAAAACTGAAATGAAAAAAAATGATTAATGAACCAAACCCTTATTATAAAATTTGTATAAAAAGTTGACTCTGATGAAAATATTTTCAGCAAAATAAAATTGAAAGTAGAGAAGCTTAGAAATATTTACCCAGTGTAGATAGAGGCTTTGAAGTATTTGTGCAGTATAGAAAATTGACCAAAGAATTAAATTGACAAATAAATTAGAAGTGACTTGGGAAAAACCTTCATCAATCAGAATTCATTAATATGTGTGATAAATGCTTTATTTAAAAGTTCTGGTTAAATTACTTATATTCCTAAATACAGTATCATCTATGGGCTCCCATATCCTGCTGGCATAGCTAATCTTTTTATGATAACTTAAGACAATAATTAGGAACATCTTTTGGACAGGAATGTAGCAGATAGGACAGGGTGCTATTGAGTTTCCCAGGTCTCCACTGGCTGTTTGCTAGTACTGTTCACAGTAGTCGGTGAGAATGCCATGGTCACATTTTTCTTTTCTATGTTATGGAGTTGCAAAGTCTAATAATAAGATTGATAGGATTCCTGGGCATAGTAATAAAAAGTTGGCAGTTTAGCTGTTCTGGTAAATTTGGCTTTAGCCACTTTTCTTTGTTCTCATTTATGAAAAGAGTTGATAAATTATCATTATGAAAAGTAATCTAACATGGAGCTAAAGCTGTTTATTCTAAAAATACAATGGAGAGACTCTATAATTGTACTCACTAAATTTTATTTTATCCTTTGCTTTCCAG
Seq C2 exon
CAAAATTGAAGGCATAGAAAATATGTGTAATCTGCAAAAGCTTAACCTTGCAGGAAATGAAATTGAGCATATTCCAGTATGGTTAGGGAAGAAGTTAAAATCTTTGCGAGTCCTCAATTTGAAAGGCAACAAGATATCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119397-CEP110:NM_007018:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF145801=LRR_9=FE(26.1=100)
A:
NA
C2:
PF145801=LRR_9=FE(28.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTTAAACTTGAAGTACTGAATCT
R:
CGATGATATCTTGTTGCCTTTCA
Band lengths:
252-1655
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)