MmuINT0034564 @ mm10
Intron Retention
Gene
ENSMUSG00000057110 | Cntrl
Description
centriolin [Source:MGI Symbol;Acc:MGI:1889576]
Coordinates
chr2:35116672-35118196:+
Coord C1 exon
chr2:35116672-35116802
Coord A exon
chr2:35116803-35118054
Coord C2 exon
chr2:35118055-35118196
Length
1252 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTTTCTTCTCTGGTTTCTAGCAA
3' ss Score
8.55
Exon sequences
Seq C1 exon
TACATCGAAAATTTGGAAAAGTGTGTTAAACTTGAAGTACTAAATCTCAGCTATAATCTAATAGTGAAGATAGAGAAAGTGGACAAGCTGTTACGATTACGTGAACTCAACTTATCATATAACAAAATCAG
Seq A exon
GTGAGTGACTGCTCCTTTGGGTGCATTGCTAGGTCTTCTTTGCCAGAGATGGACTAATAGTATCTGTGCTACTGAAAGAGTGCTTTGAAGTAACAGGAGTTTTGAGTCTTGTTTATTGAATTCTGGATCGTCACATCTGCCTTTATGTTTCAGTATCACATAAGTATAGAGTAGTTTTTACTTAGCATTGCGAAAGCAGATACCTTTTCATGGTACCAACGTAATTCTATTTTAAGCAGTAACTTTGTCTAGTTGTTATCTGTGATTCCTTGCCTTAGTACGTGAGTAATACATATGTGAAGAAAATGCTGTTTTGATCCTGAAGATATTCCAAATAATTTGATCCTGTATATTTATCCTTTTATTCTTTGCTATTGCTACTAGAAATGAGGAGTGTATGTCTCATTTCTAATTCAGATACACATACAAATATACAACTACAGGGATAAACCAGTGTAGTAAAATCTAATGATGACTTAAGCTACTTAGAAAACTATAATGGGGAAATGAAGCAAGGATCAAATCTTGAAAACCTCTATGCACCGTCTCCCCAACTCAGACTTCTGACAAATGAAGAGTGGGCCTGGAGAAGTTCCAAGACAGAAATGAAATGTTAAAAAACAACCCTGGCAAATCAAGGTCATAATATGAAAACATTCAAAAGAGTTGATCTAATGAAAGTAATTTCTTAGTAAAAACGAAGCTAGAGAAGCCGAGGAATATCTGTTGAGAATGGCACATGGACTAGGGTTAGATTGACAGCTGGATTGTAGAGACTGTGAAGAGCATGCCATCCGCCATGGTTTAGAGCATGAGTGGCAAGTGCTTCATTAATTTGAAATATTTTCACTGCAGCGCATATATCCATAAACAGTATCATTTTAGAATGTGTCACACATGCTGCTGGCACAGTACATCTTTGGTGATGACAATGCAATTATTGTGGACATCTGGGTAGCACGGTGGCACACAGTGGGGTCGAGCGTTGGCCATGGGCATCCTCTTTTCTCCTGTGTTATGTATAGTATAGTATCCTGCATATAGTAAGGTGGGCAGGGTTGCTAGGCATACTCATAGAGCAGTGGTGGGTTGGGGAAATTTGACTTTGGCCATGTGCTTGTCGTTCAGGAAAAGAGTTCGTGAATTATAGTTGTGAGAAGTAGCCTGGTCTGCTGCGGCTCTTCACTGTAAACTACAGCGAAAGGGCTTGATCATTTACTCATCATGTTTGATTTTCTTCTCTGGTTTCTAG
Seq C2 exon
CAAAATTGAAGGACTAGAAAACATGTGTAACCTGCAGAAGCTAAACCTAGCAGGTAATGAAATCGAGCATATTCCAGTGTGGTTCGCAAAGAAATTGAAATCTTTACGAGTCCTCAATCTGAAAGGCAATAAGATATCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057110:ENSMUST00000156933:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF145801=LRR_9=PU(25.8=95.5)
A:
NA
C2:
PF138551=LRR_8=PD(77.6=93.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCGAAAATTTGGAAAAGTGTGT
R:
CGATGATATCTTATTGCCTTTCAGA
Band lengths:
272-1524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types