BtaINT0040484 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011417 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr8:112425812-112427462:+
Coord C1 exon
chr8:112425812-112425942
Coord A exon
chr8:112425943-112427320
Coord C2 exon
chr8:112427321-112427462
Length
1378 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TTTTACCCTTTGGTTTCTAGCAA
3' ss Score
7.86
Exon sequences
Seq C1 exon
TATATCGAAAATTTGGAAAAATGTACTAAGCTTGAAATACTGAATCTCAGCCATAATCTAATAGGGAAGATTGAGAAGGTGGACAAGCTGTTAAAGTTACGTGAACTCAACCTATCATATAACAAAATCTG
Seq A exon
GTGAGTAAAGCCTCCTCCGGGTGGCACTGCACGGTCTTTGTCTTTGGTAATGAGGTGGGTCCACACTGCCCGTGTTACTGCAAGAAGCCTTTGGAAGAGCCAGCACTTTGGTTACTCACTTGTAGTCTAGCCCTTCACGTAGGATAATTGTCATGTTTTGGCATTTCTAAAGTACAGAATAATACCTAGTATTACCAAAGAAGGAGCTACACTTTTTGATTACCAAATTTTATCTTTGTTCCATTTTTGACAGGAAGTTTTCCCAGCTGCAGTCTGTGATGAACTGCCTTATTCATTAAGAAAGTTGGCATGAAGCAGAGTGTTTTAACCCTGTCATTTTGATCCTAAAGATATTTTGACCTGTTTTGAGCCTATGCATTTTATCCTGATGTTCTTTGCTCATTTCTGTAGTAAATATGCCTTCAGTCTTGTTTCTACTTCATAATATATATTACTCTGAGAAATAAACATAATAAAACTGACAGAGGCTAAAAGTACACATAGAAAACTCGTTTTAGGCAAAATGATACAATTGTCAAGTGTTGAAAATCTTTACATCTGTATATTTTCCCTCCACGTAAGACTTGGTATATATAATGGCCAAAGAACAAAACAGCCTAACTGTAGCAGAAGCTCTAATATGGAAAAAATGAAATGGTGGGAAAATATGATTAATGGATTAAATCCTTAATGTAAAGTTTGTATAAAAAAAAATTGATCCTGATGAAAATATTTTCAACAAAACAAAACTGTAAGTAAGTTTGCCCAGTATAGAGAATTGACAAACGAATTAAATTGCAATCAACTCAGGAAAATATTTCATCAATGAAAATTCACCAATGCAGGTGATAAATGTTTTCTTAAATATTGACTAAAACATCTTTATTCATAAATACAGTACATTCTGGGGTTCCACCCGCTCACAATGGCAGCCGTATCTCATGGCTGGCATAGCTGATCTTTGGTGGTGACTTAAGGTCGTAGTTGAGGACCTCTTCTCGAGTGCAGGGCTGTGGAAGCCTGTAGAAGGCTGCATAGCAGGGTGTGCTGCTGAGCTTCCTGGCTCTCCCCTTGCTGTCCACTGGCAGTCTTCACAGTGTTTGGGGAGACTTTCCCAGGCGGCCTCTTCTTTTCTGTGTTGTGGGACACTAAAGTCCAATAGGTAAGATAGTTGGGATTCCTGGGCAGGAAAGTAATGAAGAGTTTACTGGAGCTGTTCTGCTAAATTTGTTTTTAGCCAGTATTTTAAAATTCTCATTTGTAAATTATAGTTATGAAAAGCAACTCCACATAAAACCAAGCCTGTTTATTTTTAAAATACAATGAAGGGACACTATCATTGTACTTACTAAGTTTGATTTTACCCTTTGGTTTCTAG
Seq C2 exon
CAAAATTGAAGGCATAGAAAATCTGCACAATCTACAAAAGCTGAACCTTGCAGGAAATGAAATTGAGCATATTCCAGCGTGGTTAGGGAAGAAGTTAAAATGTTTGCGAGTCCTCAATCTGAAAGCCAACAAGATATCATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011417:ENSBTAT00000061592:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127992=LRR_4=PD(61.2=68.2),PF145801=LRR_9=PU(24.8=90.9)
A:
NA
C2:
PF145801=LRR_9=FE(29.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATCTCAGCCATAATCTAATAGGG
R:
TGATGATATCTTGTTGGCTTTCAGA
Band lengths:
233-1611
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]