GgaINT0124264 @ galGal3
Intron Retention
Description
NA
Coordinates
chr17:9050910-9052466:+
Coord C1 exon
chr17:9050910-9051040
Coord A exon
chr17:9051041-9052143
Coord C2 exon
chr17:9052144-9052466
Length
1103 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
TTATGTTTTCTTCTTTTCAGTAA
3' ss Score
9.39
Exon sequences
Seq C1 exon
TACATAGAAAATTTGGAAAAATGCTCTAAACTAGAGAGACTGAATCTAAGTAACAATCAAATAGAGAAGATTGAAAAGCTGGATAAACTGTTGAAGTTACGTGAACTCAATTTGTCTTATAACAAGATCAG
Seq A exon
GTAAGCAGAGATGCTTCTTATATTTTTGAAAACCCCAGATATGACAAAGCTGACACTCTCTTATTGTTTGAGTGGGATCTGAGAAGTATGAACAATTACATAGCATTTCCCATCAGTTACATGACAAGGGTGTAAAGCTTCAGTGAACTCTTATTTCATAGAAGCTTGTGACTTTTAATATCTTCAAAATGTTTTTGAAGGAGAAATAGTTTTGAAAAGTGCTGTATTATTATTTTGTATTATCAAAAGTTGAAGAGTAATGGTTCAAGCAATAGCAAAATTGTTTCCTTTAATTTTTTTTAATTAGTAACTTTGATCTTTATGTGGAATTGACTTTGTAGAGAAGTTGCAGTGTTGGTAGAGGAGTTAACAGCAGGAAGTAAACAAGCATTTCTACACACTTACATTCATACAACTTCCTCATTTAACAGGAATTGAAAAGGTCAGAGTAGCTTTTAGCTATTGCTGCATGTTCTCAGACTTTCGTTATAGGCAATTGGTTTCTACTTCAAAAATAGTAAGGCAACGAGCATTTTCTATCCCACTTTATGATACTCATCTCTTTAAATTAGTGCCCAAGGAAACTTGAACTCAGCATTTTCCTCATTAGCAGTTTAGTATTTTAATGAATATACTACAAAAGTAGCTCTTTACAGCATCAGTTTACAGTTGATTCTTGCTTTTATATGGAAAAATTAAATACGTTCATTTTGGTTCAGCTGTGTCATGCAAGTGTGCAATTATGTTTGCAGGATAAGAAGAGCAAAATGTGTATATTAAAATGGCATAATACATATGTAAATAAGTTTTTAATTTTATAGTGGAGAGGTGTAAAGTTGAGGACTTTGGTCACTGTAGTAAAACATTGCTGTAAAATTACTGGGTTTATTTATTCATAGCCTTACCATATGGTATGTGAAAGCAAGATATTCTCATTTTATTTGAACTGAGTCCACTGTTTGTTATGGTGTTTGTTACAGGGCTGTTTGCTCTTTCTTGAATGGTGATTAGTTGAAATAGATTTTCCATATCTTATCCATAGTGCCTCAATTGCACTGTAAATGTTATATGCTTCACAATGAGTTATGTTTTCTTCTTTTCAG
Seq C2 exon
TAAGATTGAAGGTATGGAACATTTACATAACCTACAAAAGATGAACCTTGCAGGGAATGAGATTGAGCATATTCCTGTGTGGGTAGGGAAGAAACTGAGATCCCTGCGCATCCTTAATTTGAAACAGAATAAAGTATCATCAGTAAGTGATTATAATTAAGGAACAGTCTTTTCATGAACTGGTAAATTTATATTGTTTGACCTACTCTGAATTACTCAGTGTCTTTCAGTTGTCAGTACAGTTGTGAGCCTAACAAAGCTGGTTTTTAAGGAGAAACTCTGCTGCTGTTCCACATATTCAAAGCATAAATATACTTTGTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023483:ENSGALT00000038874:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127992=LRR_4=PD(80.0=63.6),PF138551=LRR_8=PU(20.7=27.3)
A:
NA
C2:
PF138551=LRR_8=PD(77.6=83.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAAGCTGGATAAACTGTTGAAGT
R:
TGTGGAACAGCAGCAGAGTTT
Band lengths:
355-1458
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]