RnoINT0038572 @ rn6
Intron Retention
Gene
ENSRNOG00000022015 | Cntrl
Description
centriolin [Source:RGD Symbol;Acc:1305317]
Coordinates
chr3:14309590-14311257:+
Coord C1 exon
chr3:14309590-14309720
Coord A exon
chr3:14309721-14311115
Coord C2 exon
chr3:14311116-14311257
Length
1395 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CTTTCTTCTCTGCTTTCCAGTAA
3' ss Score
9.19
Exon sequences
Seq C1 exon
TACATCGAAAATCTGGAAAAGTGTGTTAAACTTGAAGTTCTAAATCTCAGCTATAATCTAATAGCGAAGATAGAGAAAGTGGACAAGCTGTTACGATTACGTGAACTCAACTTATCGTATAACAAAATCAG
Seq A exon
GTGAGTCACTGCTCCTCTAGGTAGCATTGCACGGTCTTCCTGTCAGAGATGGACTGAGAGTATCTGTGCTATTGAAAGAGTCCTTTGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGGAAAAAAAAAACAAAAAAAAAAACAAACAAAAAAAAAAGAGTCCTTTGCAGGAGCAGGAGTTTTGATTCTTGTTTACTGGATTCTGGAATGTCTCCTCTGTCTTTATGTTTCAGTGTCGCGTTAGTATAGAGTAGGTTTTTACTTAGCGTTGTGAAGGCAGACACATTTTCTTGGTACCAATTTAATTCTATTTTTAGCAGTAACTTTGTCTAATTTTTACCCGTGACCCCTTGCCTTATTACGTACATAATGCTTATGTGAAGAAAAGGCAATTTTGATCCTGAAGATACTCCACATAATTTGGTCCTGTACATGTATCCTTATGTTCTTGCTGCTGCTACAGAACTCAGGAGCGTGCCCCGCATTTCTAACTCAGATGCACATACAGACGTGCAAGTGCTGGGGGAATCAGTGTGGTAAAACCCAGTGACGACTGAAGCCACACAGAAAACTGTGACGGGGAAGATGAAGCAAGAGCAAATCTTGAAAACCTTTGTGCATGGGTTCCCCAACTCAGACTCCTGACAAGTGAAGCGACAGCAGCCATGGGCCTGGGGAAGTTCTAACTCAGACAGAAATGAAACTTAAAAAAAAAAAACCCTGGCAAATCCAGGTCATGATGTGAACAGAGTTGATCTAATGAAAGTAATTTCTTAGTGAAAACGAAGCTAGAGGCTCAGGAATGTCTGCTCAGTGCAGCAGATTGACTAGGGTCAGAGTGCCAGCTAGGTGGCCGGCAGTGTGACGAGCAGGCCGTCAGCGATGGCTTAGAGGGCGAGTAGCAAGGGCTTTATAATTTAAATATTTTCACTGCAGCACACGTATTCGTGAGCAGTATCATTTTAGAAAGTGCCACACATGCTGCTAGCATAGTGCGTCTTTGGTGATGACAGTGCTATTAAGTATAGTCCACATCTGGGTAGCACTGCGGCGCACAGTGGGGTCGAGTGTTCTACTCTCGTTGGTATGGCCATGGGCACCCTCTTCTCTCCTGTGTTATGTATGGTATAGAATATGTGTATAGGAAGATGGGCAGGGTTACCAGGCATATTCATAGAGCACTGGCAGTTTGGGGAAATTTGTCTTTGGCCACGTGGTTGGTGTTCAGGAAAAGAGTTAATGAGTTACAGTTATGAGAGGTAGCCCTGTCGCTAAGGCTGTTCACTATAAACTACAGTGAAAGGGCTTGATCACTCTCCTTCTAAGCTTGACTTTCTTCTCTGCTTTCCAG
Seq C2 exon
TAAGATTGAAGGACTAGAAAACATGTGTAACCTGCAAAAGCTAAACCTAGCAGGTAATGAAATCGAGCACATTCCTGGGTGGTTCTCAAAGAAACTGAAGTCTTTGCGAGTCCTCAATCTGAAAGGCAATAAGATATCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022015:ENSRNOT00000007776:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF145801=LRR_9=PU(25.3=93.2)
A:
NA
C2:
PF145801=LRR_9=FE(29.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCGAAAATCTGGAAAAGTGTGT
R:
CGATGATATCTTATTGCCTTTCAGA
Band lengths:
272-1667
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]