MmuINT0034564 @ mm9
Intron Retention
Gene
ENSMUSG00000057110 | Cep110
Description
centrosomal protein 110 [Source:MGI Symbol;Acc:MGI:1889576]
Coordinates
chr2:34972192-34973716:+
Coord C1 exon
chr2:34972192-34972322
Coord A exon
chr2:34972323-34973574
Coord C2 exon
chr2:34973575-34973716
Length
1252 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTTTCTTCTCTGGTTTCTAGCAA
3' ss Score
8.55
Exon sequences
Seq C1 exon
TACATCGAAAATTTGGAAAAGTGTGTTAAACTTGAAGTACTAAATCTCAGCTATAATCTAATAGTGAAGATAGAGAAAGTGGACAAGCTGTTACGATTACGTGAACTCAACTTATCATATAACAAAATCAG
Seq A exon
GTGAGTGACTGCTCCTTTGGGTGCATTGCTAGGTCTTCTTTGCCAGAGATGGACTAATAGTATCTGTGCTACTGAAAGAGTGCTTTGAAGTAACAGGAGTTTTGAGTCTTGTTTATTGAATTCTGGATCGTCACATCTGCCTTTATGTTTCAGTATCACATAAGTATAGAGTAGTTTTTACTTAGCATTGCGAAAGCAGATACCTTTTCATGGTACCAACGTAATTCTATTTTAAGCAGTAACTTTGTCTAGTTGTTATCTGTGATTCCTTGCCTTAGTACGTGAGTAATACATATGTGAAGAAAATGCTGTTTTGATCCTGAAGATATTCCAAATAATTTGATCCTGTATATTTATCCTTTTATTCTTTGCTATTGCTACTAGAAATGAGGAGTGTATGTCTCATTTCTAATTCAGATACACATACAAATATACAACTACAGGGATAAACCAGTGTAGTAAAATCTAATGATGACTTAAGCTACTTAGAAAACTATAATGGGGAAATGAAGCAAGGATCAAATCTTGAAAACCTCTATGCACCGTCTCCCCAACTCAGACTTCTGACAAATGAAGAGTGGGCCTGGAGAAGTTCCAAGACAGAAATGAAATGTTAAAAAACAACCCTGGCAAATCAAGGTCATAATATGAAAACATTCAAAAGAGTTGATCTAATGAAAGTAATTTCTTAGTAAAAACGAAGCTAGAGAAGCCGAGGAATATCTGTTGAGAATGGCACATGGACTAGGGTTAGATTGACAGCTGGATTGTAGAGACTGTGAAGAGCATGCCATCCGCCATGGTTTAGAGCATGAGTGGCAAGTGCTTCATTAATTTGAAATATTTTCACTGCAGCGCATATATCCATAAACAGTATCATTTTAGAATGTGTCACACATGCTGCTGGCACAGTACATCTTTGGTGATGACAATGCAATTATTGTGGACATCTGGGTAGCACGGTGGCACACAGTGGGGTCGAGCGTTGGCCATGGGCATCCTCTTTTCTCCTGTGTTATGTATAGTATAGTATCCTGCATATAGTAAGGTGGGCAGGGTTGCTAGGCATACTCATAGAGCAGTGGTGGGTTGGGGAAATTTGACTTTGGCCATGTGCTTGTCGTTCAGGAAAAGAGTTCGTGAATTATAGTTGTGAGAAGTAGCCTGGTCTGCTGCGGCTCTTCACTGTAAACTACAGCGAAAGGGCTTGATCATTTACTCATCATGTTTGATTTTCTTCTCTGGTTTCTAG
Seq C2 exon
CAAAATTGAAGGACTAGAAAACATGTGTAACCTGCAGAAGCTAAACCTAGCAGGTAATGAAATCGAGCATATTCCAGTGTGGTTCGCAAAGAAATTGAAATCTTTACGAGTCCTCAATCTGAAAGGCAATAAGATATCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057110-Cep110:NM_012018:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF145801=LRR_9=PU(25.8=95.5)
A:
NA
C2:
PF145801=LRR_9=FE(28.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCGAAAATTTGGAAAAGTGTGT
R:
CGATGATATCTTATTGCCTTTCAGA
Band lengths:
272-1524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: