MmuINT0146285 @ mm9
Intron Retention
Gene
ENSMUSG00000006469 | Slc34a3
Description
solute carrier family 34 (sodium phosphate), member 3 [Source:MGI Symbol;Acc:MGI:2159410]
Coordinates
chr2:25088488-25088946:-
Coord C1 exon
chr2:25088823-25088946
Coord A exon
chr2:25088575-25088822
Coord C2 exon
chr2:25088488-25088574
Length
248 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTC
5' ss Score
6.49
3' ss Seq
ACCTGACCTGACCCCTGCAGGAA
3' ss Score
7.92
Exon sequences
Seq C1 exon
AGCTAGGATTGGGCCTGGGTCTTCCCCTTCTTGAAATCCATGCCGAATTCCCTCGCCGGTGGCCAGGTCCCCAACCCTACTCTGGATGCCTTTGACCTGGTGGACCGGAGTCTGAGAAATGCAG
Seq A exon
GTATTCGGTGTCCCTGGGTTCCTATCTCTTAGCAACTACCCTAGGCAAAAATGAAATTTCTCTAGCTCCCCTCTGGACAGAGAGAGGTCTCTTCTCACCTCTGGCCTGAGCAGACTCATTTGATCCCTGCCTCTGCTTCTATACTCACCCATGGCCCCTTGTTGCCCCAGTCCCCTCCACTTCTTCCTTCCTTTTGTCCTTCTCCTTGGGAATTCTACAAACAGCCCTACCTGACCTGACCCCTGCAG
Seq C2 exon
GAATCTCCGGTTCCATTCCAGGCTTGGAAGAGGGAGGTACAGATCCCTGGACCTTCTCTCCGCTGAAGAACGCTGACCAACTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006469-Slc34a3:NM_080854:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.207 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAGGATTGGGCCTGGGTCTT
R:
AGTTGGTCAGCGTTCTTCAGC
Band lengths:
204-452
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: