MmuEX0043099 @ mm9
Exon Skipping
Gene
ENSMUSG00000006469 | Slc34a3
Description
solute carrier family 34 (sodium phosphate), member 3 [Source:MGI Symbol;Acc:MGI:2159410]
Coordinates
chr2:25088488-25089225:-
Coord C1 exon
chr2:25089081-25089225
Coord A exon
chr2:25088823-25088946
Coord C2 exon
chr2:25088488-25088574
Length
124 bp
Sequences
Splice sites
3' ss Seq
TACTGCCTTGCCCTCAGCAGAGC
3' ss Score
4.93
5' ss Seq
CAGGTATTC
5' ss Score
6.49
Exon sequences
Seq C1 exon
CAAAGACCAGTGAGGGAGCTGGGAAGCCAGTGTCCCATTTCTTCTGCCCCCTGAAACTAGACTGGGTTTGTCTGATAACCATCCGAGGTCACCGTATCCATCTGTCTGTGGTCAGAGGAAAAGGAGAACCACCAAGACCTGCAAG
Seq A exon
AGCTAGGATTGGGCCTGGGTCTTCCCCTTCTTGAAATCCATGCCGAATTCCCTCGCCGGTGGCCAGGTCCCCAACCCTACTCTGGATGCCTTTGACCTGGTGGACCGGAGTCTGAGAAATGCAG
Seq C2 exon
GAATCTCCGGTTCCATTCCAGGCTTGGAAGAGGGAGGTACAGATCCCTGGACCTTCTCTCCGCTGAAGAACGCTGACCAACTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006469-'1-6,'1-3,2-6
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.207 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAGACCAGTGAGGGAGCTG
R:
AGTTGGTCAGCGTTCTTCAGC
Band lengths:
227-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: