MmuALTA0016644-1/3 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000006469 | Slc34a3
Description
solute carrier family 34 (sodium phosphate), member 3 [Source:MGI Symbol;Acc:MGI:2159410]
Coordinates
chr2:25088823-25089225:-
Coord C1 exon
chr2:25089081-25089225
Coord A exon
NA
Coord C2 exon
chr2:25088823-25088880
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGG
5' ss Score
5.28
3' ss Seq
ATTCCCTCGCCGGTGGCCAGGTC
3' ss Score
4.82
Exon sequences
Seq C1 exon
CAAAGACCAGTGAGGGAGCTGGGAAGCCAGTGTCCCATTTCTTCTGCCCCCTGAAACTAGACTGGGTTTGTCTGATAACCATCCGAGGTCACCGTATCCATCTGTCTGTGGTCAGAGGAAAAGGAGAACCACCAAGACCTGCAAG
Seq A exon
NA
Seq C2 exon
GTCCCCAACCCTACTCTGGATGCCTTTGACCTGGTGGACCGGAGTCTGAGAAATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006469-1-4,1-3,1-2-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.207
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCCCATTTCTTCTGCCCC
R:
GCATTTCTCAGACTCCGGTCC
Band lengths:
172-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: