MmuALTA0016644-1/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000006469 | Slc34a3
Description
solute carrier family 34 (sodium phosphate), member 3 [Source:MGI Symbol;Acc:MGI:2159410]
Coordinates
chr2:25233307-25233705:-
Coord C1 exon
chr2:25233561-25233705
Coord A exon
NA
Coord C2 exon
chr2:25233307-25233360
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGG
5' ss Score
5.28
3' ss Seq
ATTCCCTCGCCGGTGGCCAGGTC
3' ss Score
4.82
Exon sequences
Seq C1 exon
CAAAGACCAGTGAGGGAGCTGGGAAGCCAGTGTCCCATTTCTTCTGCCCCCTGAAACTAGACTGGGTTTGTCTGATAACCATCCGAGGTCACCGTATCCATCTGTCTGTGGTCAGAGGAAAAGGAGAACCACCAAGACCTGCAAG
Seq A exon
NA
Seq C2 exon
GTCCCCAACCCTACTCTGGATGCCTTTGACCTGGTGGACCGGAGTCTGAGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006469-4-6,4-5,4-4-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.172
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAGACCAGTGAGGGAGCTG
R:
CACCAGGTCAAAGGCATCCAG
Band lengths:
181-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types