HsaEX6064260 @ hg38
Exon Skipping
Gene
ENSG00000198569 | SLC34A3
Description
solute carrier family 34 member 3 [Source:HGNC Symbol;Acc:HGNC:20305]
Coordinates
chr9:137230757-137232161:+
Coord C1 exon
chr9:137230757-137230938
Coord A exon
chr9:137231664-137231787
Coord C2 exon
chr9:137232072-137232161
Length
124 bp
Sequences
Splice sites
3' ss Seq
ACGCGCGTCCCCCCCAGCAGATC
3' ss Score
6.29
5' ss Seq
AAGGTACCA
5' ss Score
7.87
Exon sequences
Seq C1 exon
ATGGAGACAAGGCCTAGGGGCCTTGGGGCCAGGAGGGTACCCCCGTGAGGGCCTGGGCTCCTGGGTAAACATTAATGGGCTCAGTACCCAGCAGGTCATGTGCGCGATCAGGGGATCTTTGACCTGCAACTGCTCCCGCCCCGTGTCTCCTCCCTGCAGGTGCCCCCTCACCACCCACACAG
Seq A exon
ATCTAGACCTGGGCCTGGGTCTGTCCCTGCCCGAAATCCATGCCGAGTTCCCTTCCCGGCAGCCAGGTCCCCCACCCCACTCTGGACGCGGTTGACCTAGTGGAAAAGACTCTGAGGAATGAAG
Seq C2 exon
GGACCTCCAGTTCTGCTCCAGTCTTGGAGGAAGGGGACACAGACCCCTGGACCCTCCCTCAGCTGAAGGACACAAGCCAGCCCTGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198569-'0-5,'0-3,5-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.345 C2=0.516
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGACAAGGCCTAGGGG
R:
TTGTGTCCTTCAGCTGAGGGA
Band lengths:
256-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains