RnoEX0082283 @ rn6
Exon Skipping
Gene
ENSRNOG00000010451 | Slc34a3
Description
solute carrier family 34 member 3 [Source:RGD Symbol;Acc:708551]
Coordinates
chr3:2452685-2453933:-
Coord C1 exon
chr3:2453890-2453933
Coord A exon
chr3:2453029-2453152
Coord C2 exon
chr3:2452685-2452771
Length
124 bp
Sequences
Splice sites
3' ss Seq
ACCTGCCTTGCCCTCAGCAGATC
3' ss Score
7.61
5' ss Seq
CAGGTATCA
5' ss Score
7.33
Exon sequences
Seq C1 exon
CGCTGGGCCTCCTCCCCGCTGGTGCCCCCTCACCACACATGCAG
Seq A exon
ATCTAGGATTGGGCCTGGGTCTTCCACTTCTTGAAATCCATGCCGAATTCCCTTGCTGGCGACCAGGTCCCCAACCCTACTCTGGATGCAATTGGCCTGGTGGACTGGAGTCTGAGAAATGCAG
Seq C2 exon
GGACCTCTGGTTCCACCCCAGGCTTAGAGGAGGGAGGCACAGACCCCTGGACCTTCTCTCAGCTGAAGAATACTGACCAACTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010451-'0-6,'0-4,7-6
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.241 C2=0.445
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCCCTCACCACACAT
R:
TGAGTTGGTCAGTATTCTTCAGCTG
Band lengths:
106-230
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]