HsaEX6064260 @ hg19
Exon Skipping
Gene
ENSG00000198569 | SLC34A3
Description
solute carrier family 34 (sodium phosphate), member 3 [Source:HGNC Symbol;Acc:20305]
Coordinates
chr9:140125385-140126613:+
Coord C1 exon
chr9:140125385-140125531
Coord A exon
chr9:140126116-140126239
Coord C2 exon
chr9:140126524-140126613
Length
124 bp
Sequences
Splice sites
3' ss Seq
ACGCGCGTCCCCCCCAGCAGATC
3' ss Score
6.29
5' ss Seq
AAGGTACCA
5' ss Score
7.87
Exon sequences
Seq C1 exon
ACACAGGTAGGAGCTCCTAGGACCAGGCTGAGGCCCAGGGACAGTGAGGCCGAGGCTGGGTGGCCTCCAGGCCAAGGGCTTGGGCCCCATCCTGAGTCTCCAGGACCCAAGGGCAAGAGACGCCAGGCTTGGGCAGCAGGAGGGAGG
Seq A exon
ATCTAGACCTGGGCCTGGGTCTGTCCCTGCCCGAAATCCATGCCGAGTTCCCTTCCCGGCAGCCAGGTCCCCCACCCCACTCTGGACGCGGTTGACCTAGTGGAAAAGACTCTGAGGAATGAAG
Seq C2 exon
GGACCTCCAGTTCTGCTCCAGTCTTGGAGGAAGGGGACACAGACCCCTGGACCCTCCCTCAGCTGAAGGACACAAGCCAGCCCTGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198569-'0-2,'0-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.345 C2=0.516
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGGAGCTCCTAGGACCAGGC
R:
CCAGGGCTGGCTTGTGTC
Band lengths:
226-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)