MmuINT0052969 @ mm9
Intron Retention
Gene
ENSMUSG00000026958 | Dpp7
Description
dipeptidylpeptidase 7 [Source:MGI Symbol;Acc:MGI:1933213]
Coordinates
chr2:25210261-25210548:-
Coord C1 exon
chr2:25210413-25210548
Coord A exon
chr2:25210343-25210412
Coord C2 exon
chr2:25210261-25210342
Length
70 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
AACCTTGGTCTCTTCTCCAGGAC
3' ss Score
9.58
Exon sequences
Seq C1 exon
TTATGGGGGGATGCTGAGTGCCTACATGAGGATGAAGTACCCCCACCTGGTGGCTGGGGCACTGGCAGCCAGCGCTCCTGTTGTAGCTGTTGCAGGCCTTGGGGACTCCTACCAATTCTTCCGAGATGTCACAGCG
Seq A exon
GTGAGTGAGGGGACTTGGGTACCCCAGGCCAGTGCAAGAATGGCAGCAGCAACCTTGGTCTCTTCTCCAG
Seq C2 exon
GACTTTTATGGCCAGAGTCCCAAGTGCGCCCAGGCTGTGCGGGATGCCTTTCAGCAAATCAAAGACTTGTTCCTCCAGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026958-Dpp7:NM_031843:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF055777=Peptidase_S28=FE(10.5=100)
A:
NA
C2:
PF055777=Peptidase_S28=FE(6.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATGAAGTACCCCCACCTG
R:
GATTTGCTGAAAGGCATCCCG
Band lengths:
168-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: