HsaINT0051831 @ hg19
Intron Retention
Gene
ENSG00000176978 | DPP7
Description
dipeptidyl-peptidase 7 [Source:HGNC Symbol;Acc:14892]
Coordinates
chr9:140007658-140007948:-
Coord C1 exon
chr9:140007813-140007948
Coord A exon
chr9:140007740-140007812
Coord C2 exon
chr9:140007658-140007739
Length
73 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
GCACGGTCTCTTTCCCCCAGGAC
3' ss Score
10.69
Exon sequences
Seq C1 exon
TTATGGGGGGATGCTCAGTGCCTACCTGAGGATGAAGTATCCCCACCTGGTGGCGGGGGCGCTGGCGGCCAGCGCGCCCGTTCTAGCTGTGGCAGGCCTCGGCGACTCCAACCAGTTCTTCCGGGACGTCACGGCG
Seq A exon
GTGAGTGAGGCTTGGGGTCCTCCAGGCCCCCTAAGGGACAGCAGCTGCAGTCAGCACGGTCTCTTTCCCCCAG
Seq C2 exon
GACTTTGAGGGCCAGAGTCCCAAATGCACCCAGGGTGTGCGGGAAGCGTTCCGACAGATCAAGGACTTGTTCCTACAGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176978-DPP7:NM_013379:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.211 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF055777=Peptidase_S28=FE(10.5=100)
A:
NA
C2:
PF055777=Peptidase_S28=FE(6.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAAGTATCCCCACCTGGTG
R:
GGAACAAGTCCTTGATCTGTCGG
Band lengths:
179-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)