RnoINT0050877 @ rn6
Intron Retention
Gene
ENSRNOG00000012640 | Dpp7
Description
dipeptidylpeptidase 7 [Source:RGD Symbol;Acc:71073]
Coordinates
chr3:2571643-2572050:-
Coord C1 exon
chr3:2571915-2572050
Coord A exon
chr3:2571725-2571914
Coord C2 exon
chr3:2571643-2571724
Length
190 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
ATCCCCAACCCCTTTTCCAGGAC
3' ss Score
8.27
Exon sequences
Seq C1 exon
TTATGGGGGAATGCTGAGCGCCTACATGAGGATGAAGTACCCCCACCTGGTGGCTGGGGCACTGGCGGCCAGCGCTCCTGTTATAGCTGTCGCAGGCCTTGGCAACCCCGACCAATTCTTCCGAGATGTCACAGCG
Seq A exon
GTGAGTGATGGGGCTTGGGTACCCCAGGCCAGTGCAGGAAGGTGAGCAGCAGCAATCTTGGCTTCTTTTCCAGGACTTCTTTTTTTTTTTTTCTTTTTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTGCTAGGCAAGCGCTCTACCGCTAAGCTGAATCCCCAACCCCTTTTCCAG
Seq C2 exon
GACTTCTATGGCCAGAGTCCCAAGTGTGCCCAGGCTGTGCGGGATGCTTTCCAGCAAATCAAAGACTTGTTCCTCCAGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012640:ENSRNOT00000017271:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF055777=Peptidase_S28=FE(10.5=100)
A:
NA
C2:
PF055777=Peptidase_S28=FE(6.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTATGGGGGAATGCTGAGCG
R:
CTCCCTGGAGGAACAAGTCTT
Band lengths:
218-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]