DreINT0059762 @ danRer10
Intron Retention
Gene
ENSDARG00000027750 | dpp7
Description
dipeptidyl-peptidase 7 [Source:ZFIN;Acc:ZDB-GENE-050306-16]
Coordinates
chr5:28563772-28564080:+
Coord C1 exon
chr5:28563772-28563907
Coord A exon
chr5:28563908-28563998
Coord C2 exon
chr5:28563999-28564080
Length
91 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGA
5' ss Score
4.19
3' ss Seq
ACATCTGTTTGCTTGTTCAGGAC
3' ss Score
9.84
Exon sequences
Seq C1 exon
CTATGGAGGAATGCTGAGTGTCTACATGAGAATCAGGTACCCCAATATTGTGGCTGGAGCATTAGCCGCTAGCGCCCCCATTCTGTCCACCGCAGGTCTCGGAGACCCTCGACAGTTTTTCCAGGATGTAACTGCT
Seq A exon
GTAAGAGGCTTCACTTTAACTCTCTTTTATCTGCATAAAAGCGAGCAATTGTTTGCATTAGAGTAACTTAAACATCTGTTTGCTTGTTCAG
Seq C2 exon
GACTTTGAGAAGTTCAACCCTGCCTGCAGAAATGCAGTGCAAGGAGCTTTCCAGAAGCTAAACACTTTGGCGCAACAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027750:ENSDART00000037891:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF055777=Peptidase_S28=FE(10.5=100)
A:
NA
C2:
PF055777=Peptidase_S28=FE(6.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAATATTGTGGCTGGAGCA
R:
TGTTGCGCCAAAGTGTTTAGC
Band lengths:
173-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]