MmuINT0131360 @ mm9
Intron Retention
Gene
ENSMUSG00000038831 | Ralgps1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:MGI Symbol;Acc:MGI:1922008]
Coordinates
chr2:33013292-33014556:-
Coord C1 exon
chr2:33014430-33014556
Coord A exon
chr2:33013450-33014429
Coord C2 exon
chr2:33013292-33013449
Length
980 bp
Sequences
Splice sites
5' ss Seq
CAAGTGGGT
5' ss Score
4.82
3' ss Seq
TCTTCCTCTCCGTTTTCCAGTCT
3' ss Score
9.27
Exon sequences
Seq C1 exon
GCCCCTCTGCCGGCTCCAGCTCAGCCAGGTTCCGCCGGAGGCCCACCTGTCCAGATACATCTGTGGCCGGCAGCCTCCCCACACCGCCAGTCCCCAGACACAGGAAGAGCCACAGCCTAGGCAACAA
Seq A exon
GTGGGTGACTTGACTGAGAAACTCTCTTCTGGGGTGAAGGAAGGCTGGGCCCTTCCCCATCCTCATTTGGAAACTCTTGATGCTCTTGGCAGACACACTCTCCTAAGGCTGGTGTGAGCGTGGGAATGCAGAGGCGACAGGCTGCAGTTTGTATGCCGCCTGCAAGGGACCTGGGCTCAGTAGCTAGTGAAGAACTGTGCAAAAGCTCAGTTGACCGCTCATTTAGGGAGAACTGAGTCCAGCAGACATCAAAGACTATCCTCAGGGCAACAGTAGGTGTCTGAGTACCTGCTGGTTCACTGGCCCTCTGGGGCCCCCAGCTGGGGCACATACACGTCCTCAGCATTGCTGGGGAAAGCCACACCTTTATCCCCTGGGGCACCCTTTGCCCCTCCCTTCCTCCCTCCTTTCCTTCCATCCTTCCTTCCACCTGCATCCTAGCACTAAGGCACAGATGCCCTGCCTCTTGGCTGGTCCTTGTGGAACTCAGAGGCCAGAACAGGACTAAGTGTGTAGGGTCCCCAGTGCCTCCTCTTCTCCAGACATTGCCACACACCCATGGTCACCATCTCACTGACCCATGCAAACCTCTGGGCAGCTGCTGCCATGCTCACTGTATATCTAGCTGGGGTCACGAAGCTCTGATGCTCCTCAGGGTGGCCTACGGGCCTGTCGCCTTGGCCTCATCTCACAAGCCTCACCATCATCCTGAGACACAGGCAGGACACAGGCAGGGCAAGCAGCATTAGTCTCCATTGACAGAGGGAGAAGTTGAGGCTCAGAAAAAGGATGTGGCTTGCCCAAGGTCACACCATAAGAAGAGGCTGAGCCTGGTGCACCAATGGGCTCTGGGCAGAGGCGTCTCCAGCAGTAAGTCCCTGGCCCTGGCTCTGGCTCTGGCTCTGGCTCTGGCTTCTGGGGCCAGCGCCGCTGTGCTCCCAGGATAAGGAGCTGCTTCTCTCTTCCTCTCCGTTTTCCAG
Seq C2 exon
TCTGATGTGTCAGTTGAGTGTAGTTGAAAGTAAGAGTGCGACATTCCCATCGGAGAAGGCCAGGCACCTGCTGGACGACAGTGTCCTAGAGTCCCGCAGCCCCCGCAGGGGCCTCACCCACACCTCCTCCACCGCCATCACCAACGGACTCTCCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038831-Ralgps1:NM_175211:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.935 A=NA C2=0.704
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGCCGGCTCCAGCTC
R:
CTAGGGAGAGTCCGTTGGTGA
Band lengths:
281-1261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: