HsaINT1028824 @ hg38
Intron Retention
Gene
ENSG00000136828 | RALGPS1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:HGNC Symbol;Acc:HGNC:16851]
Coordinates
chr9:127195091-127196631:+
Coord C1 exon
chr9:127195091-127195217
Coord A exon
chr9:127195218-127196473
Coord C2 exon
chr9:127196474-127196631
Length
1256 bp
Sequences
Splice sites
5' ss Seq
CAAGTGGGT
5' ss Score
4.82
3' ss Seq
TCTTCCTTTCCATTTTCCAGTAT
3' ss Score
8.66
Exon sequences
Seq C1 exon
GTCCCTCTGCTGGCTCCGGTTCTGCGAGGTTCAGCCGGAGGCCCACCTGTCCTGACACATCTGTTGCTGGCAGCCTCCCCACACCTCCAGTCCCCAGACACAGGAAGAGCCACAGCCTAGGCAACAA
Seq A exon
GTGGGTGACTGAGCAAGCCCTCCCGCCGGGCTTCAGACCGTCCTGCACATGGGCCTGGGCACAGTGCAGGGAATCACTTGCTGGCTGGGTCCCTCCCCTGCCCTGTTCTGGGAGTTGCTGATGAGAGCTCTTGGAATCCTGGCCAGTGCGCTTTCCTGAGGCTGGTGTGAGCTTGGGAGGAGCTGAGGGGCACTGTGGCAGCACTGACTCCACACCACCGACAGGTGTCTCAGGCTCAGCAGCTGATGGAGGAAGGGTGCAGGGAAGGGCAGGGAAGTAGCAGTGGCATTCCAGAGAATTTGCCCAAGCCCAGTTAATGACTCATGGAAAACCCCAAAGTCCAGTAGACACCAGTGACTGTCATCCAGGGCAGTGTTCAGTTTCTCATGGCATCTGCCTACAGAGCAGTGAACCTGCTGGCTCATCAGTCCTGTGAGGCCCATAGCTGGGGGACATGCGTGAGCCCTCGGCATGGCTAGGGCAACTGTGCCTGTGTCTCCAGGGCATTAGGCACAGGCTTCCGAACAGATGAGTCCCTTCCTTCCTTCCTTCCTTCCCTCCCTTCCTTTTCTCCCTTCTTCCTTCCCTCCCTCCCTCCCTTCCTCCTTCCTTCTTTCCTACCTACCTACCTACCTACCACTTCCAAGGCACAAGCTCAGCCCAGCCTAGGCAGGCCCTGGAGGAGCTCCAAGGCTGGAGGAGAAAGAGTTGCTCTTTGAGTGTTAAGCAGCCCTCTGTGCTAGACACTCTGCATATGCCTGTCAAGCATGATCTCCCTGAGTCCCCATGCAGGCCTCTGAGGTGGGTGCTATTATTACATATTTTGAGAACGAGTCTAATGAGGTTCAACAAGGTGAAGTTCGTTGCAATGGTGGAAAAACATCAGAGCAAGGGTCTGGACCCGGTGCATGTGACTCCAGGAGCAGACATCCTGGCCACAGGCCCACTGCTGCTCACCTGTGCAGCCTCATCACTCACGAGCACATCTGCTCACTCGAGCCTCATAGCCACCAGGGGGATGGGCAGGGCAAGTATCGTTATCCCCATTGGATGGATGGAGAAACTGAGGCTCAGAGAAAGGATGTGACTTGCCCAAGGTCATGGCATGAGAGAGGACAGAGCCTGGGCTGTACCGTGGCTCTGGGTGGAGGCCTTTTTCCTGCAGCTGCACCATCTGCTCCGGCCCCAGGCAGGTGTAACCACTGTCACTCCATAGATAAGGAGCTTTGCCTTCTTTCTTCCTTTCCATTTTCCAG
Seq C2 exon
TATGATGTGTCAGTTGAGTGTAGTTGAGAGTAAAAGTGCGACATTCCCATCGGAGAAAGCAAGGCACCTACTGGACGACAGTGTCCTAGAGTCCCGCAGCCCCCGAAGGGGCCTGGCTCTGACCTCCTCCTCTGCTGTCACCAATGGACTCTCCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136828:ENST00000259351:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.930 A=NA C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGCTGGCTCCGGTTCT
R:
AGGGAGAGTCCATTGGTGACA
Band lengths:
279-1535
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains