HsaEX0052089 @ hg38
Exon Skipping
Gene
ENSG00000136828 | RALGPS1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:HGNC Symbol;Acc:HGNC:16851]
Coordinates
chr9:127195091-127210778:+
Coord C1 exon
chr9:127195091-127195217
Coord A exon
chr9:127196474-127196631
Coord C2 exon
chr9:127210695-127210778
Length
158 bp
Sequences
Splice sites
3' ss Seq
TCTTCCTTTCCATTTTCCAGTAT
3' ss Score
8.66
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
Exon sequences
Seq C1 exon
GTCCCTCTGCTGGCTCCGGTTCTGCGAGGTTCAGCCGGAGGCCCACCTGTCCTGACACATCTGTTGCTGGCAGCCTCCCCACACCTCCAGTCCCCAGACACAGGAAGAGCCACAGCCTAGGCAACAA
Seq A exon
TATGATGTGTCAGTTGAGTGTAGTTGAGAGTAAAAGTGCGACATTCCCATCGGAGAAAGCAAGGCACCTACTGGACGACAGTGTCCTAGAGTCCCGCAGCCCCCGAAGGGGCCTGGCTCTGACCTCCTCCTCTGCTGTCACCAATGGACTCTCCCTAG
Seq C2 exon
CAGGGGACGTCTCTATGCCACCCTGGGGCCCAACTGGCGGGTTCCAGTTAGGAATTCTCCCAGAACCCGGAGCTGTGTCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136828_MULTIEX2-4/7=3-7
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.930 A=0.500 C2=0.097
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCTCTGCTGGCTCCG
R:
TGTAGACACAGCTCCGGGTTC
Band lengths:
210-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development