DreEX6050753 @ danRer10
Exon Skipping
Gene
ENSDARG00000068370 | ralgps1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:ZFIN;Acc:ZDB-GENE-070720-16]
Coordinates
chr8:32921172-32923546:-
Coord C1 exon
chr8:32923420-32923546
Coord A exon
chr8:32921526-32921680
Coord C2 exon
chr8:32921172-32921220
Length
155 bp
Sequences
Splice sites
3' ss Seq
ATTTCTCTCTTTTTTCTCAGTAT
3' ss Score
9.02
5' ss Seq
TGGGTAATG
5' ss Score
5.68
Exon sequences
Seq C1 exon
GTCCCTCAGAAGTGTCCATGTCAGTGAGATATAACAGGAGGCCGACCTGTCCAGATACATCAGTGGTTGCCCACCTCCCAACACCACCTCCTGCTCGACACAGGAAGAGCCACAGCCTAGGAAATAA
Seq A exon
TATGATGTGTCAGTTTGGTGTTGTGGAGAGTAAAAGTGCAACATTTCCTGAAAAGGAAAAGGCTCGACACCTACTGGATGACAGCTTCTTAGAGTCTCACAGTCCTGTCAGAAACCATACACATGATTCAGTATTCACCAACGGCATATCACTGG
Seq C2 exon
GCAGTAGAGAGAGCTCTTTTAGTGATGAATTATCAAGTACTGTTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068370-'13-16,'13-15,14-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.767 A=0.415 C2=0.118
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]