MmuEX0038662 @ mm10
Exon Skipping
Gene
ENSMUSG00000038831 | Ralgps1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:MGI Symbol;Acc:MGI:1922008]
Coordinates
chr2:33146570-33159036:-
Coord C1 exon
chr2:33158910-33159036
Coord A exon
chr2:33157772-33157929
Coord C2 exon
chr2:33146570-33146653
Length
158 bp
Sequences
Splice sites
3' ss Seq
TCTTCCTCTCCGTTTTCCAGTCT
3' ss Score
9.27
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
Exon sequences
Seq C1 exon
GCCCCTCTGCCGGCTCCAGCTCAGCCAGGTTCCGCCGGAGGCCCACCTGTCCAGATACATCTGTGGCCGGCAGCCTCCCCACACCGCCAGTCCCCAGACACAGGAAGAGCCACAGCCTAGGCAACAA
Seq A exon
TCTGATGTGTCAGTTGAGTGTAGTTGAAAGTAAGAGTGCGACATTCCCATCGGAGAAGGCCAGGCACCTGCTGGACGACAGTGTCCTAGAGTCCCGCAGCCCCCGCAGGGGCCTCACCCACACCTCCTCCACCGCCATCACCAACGGACTCTCCCTAG
Seq C2 exon
CAGGGGACGTCTTTATGCCACGCTGGGACCTAACTGGCGGGTTCCAGTTCGGAATTCTCCCAGAACTCGGAGCTGTGTCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038831_MULTIEX1-4/10=3-6
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.907 A=0.611 C2=0.181
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGCCGGCTCCAGCTC
R:
AGACACAGCTCCGAGTTCTGG
Band lengths:
203-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types