MmuEX0038663 @ mm10
Exon Skipping
Gene
ENSMUSG00000038831 | Ralgps1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:MGI Symbol;Acc:MGI:1922008]
Coordinates
chr2:33146570-33157929:-
Coord C1 exon
chr2:33157772-33157929
Coord A exon
chr2:33155288-33155339
Coord C2 exon
chr2:33146570-33146653
Length
52 bp
Sequences
Splice sites
3' ss Seq
GATCTGTGTTCCTTTTCCAGGCA
3' ss Score
11
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
TCTGATGTGTCAGTTGAGTGTAGTTGAAAGTAAGAGTGCGACATTCCCATCGGAGAAGGCCAGGCACCTGCTGGACGACAGTGTCCTAGAGTCCCGCAGCCCCCGCAGGGGCCTCACCCACACCTCCTCCACCGCCATCACCAACGGACTCTCCCTAG
Seq A exon
GCAGTAGTGAGAGCTCAGAGTTTAGTGAAGAAATGTCTGCAGGGCTGGAAAG
Seq C2 exon
CAGGGGACGTCTTTATGCCACGCTGGGACCTAACTGGCGGGTTCCAGTTCGGAATTCTCCCAGAACTCGGAGCTGTGTCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038831_MULTIEX1-5/10=4-6
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.611 A=0.611 C2=0.181
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGACATTCCCATCGGAGAAG
R:
GTGGCATAAAGACGTCCCCTG
Band lengths:
142-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types