DreEX6009076 @ danRer10
Exon Skipping
Gene
ENSDARG00000102152 | FO834898.1
Description
NA
Coordinates
chr5:4264904-4270751:-
Coord C1 exon
chr5:4270600-4270751
Coord A exon
chr5:4269223-4269271
Coord C2 exon
chr5:4264904-4264984
Length
49 bp
Sequences
Splice sites
3' ss Seq
GTTCTGTGTTTTTCCATCAGGCA
3' ss Score
9.18
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
CATGATGTGGCATTTCGGTGTGGTGGAGAGTAAAAGTGCCACATTTCCCACAGAGAAACCACGCCACCTGCTGGACGACAGCTTCCTGGAGTCCCAGAGTCCAGCCCGAACCCATCCGCACAGCTCCTCTGTGTCCAACGGCATCTCTATAG
Seq A exon
GCAGCAGTCAGAGTTCATTCTGTGATGATCTTTCTCCAGGAGTCGAGAG
Seq C2 exon
GGGCCGCATGTACGCCACTCTGGGCCCCAACTGGAGGGCTCCTGTACGCAATTCCCCCAGAGGCCGCGGCCGGGCCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102152-'4-5,'4-4,5-5=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.654 A=0.059 C2=0.714
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGCTTCCTGGAGTCCCA
R:
CTCTGGGGGAATTGCGTACAG
Band lengths:
138-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]