DreEX6050754 @ danRer10
Exon Skipping
Gene
ENSDARG00000068370 | ralgps1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:ZFIN;Acc:ZDB-GENE-070720-16]
Coordinates
chr8:32920988-32921680:-
Coord C1 exon
chr8:32921526-32921680
Coord A exon
chr8:32921172-32921220
Coord C2 exon
chr8:32920988-32921068
Length
49 bp
Sequences
Splice sites
3' ss Seq
TTTCCTCTGTCCCTCTGCAGGCA
3' ss Score
13.47
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
TATGATGTGTCAGTTTGGTGTTGTGGAGAGTAAAAGTGCAACATTTCCTGAAAAGGAAAAGGCTCGACACCTACTGGATGACAGCTTCTTAGAGTCTCACAGTCCTGTCAGAAACCATACACATGATTCAGTATTCACCAACGGCATATCACTGG
Seq A exon
GCAGTAGAGAGAGCTCTTTTAGTGATGAATTATCAAGTACTGTTGAGAG
Seq C2 exon
AGGCCGAATGTATGCAACACTTGGCCCAAATTGGCGTGTCCCAATATGTAACTCTCCTAGAAGTAGAAGCTACATTTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068370-'14-17,'14-16,15-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.415 A=0.118 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGGCTCGACACCTACTGGA
R:
CCAATTTGGGCCAAGTGTTGC
Band lengths:
132-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]