GgaEX1048057 @ galGal4
Exon Skipping
Gene
ENSGALG00000000906 | RALGPS1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:HGNC Symbol;Acc:HGNC:16851]
Coordinates
chr17:10354427-10356087:+
Coord C1 exon
chr17:10354427-10354553
Coord A exon
chr17:10355236-10355387
Coord C2 exon
chr17:10356036-10356087
Length
152 bp
Sequences
Splice sites
3' ss Seq
TCCTCTTTCCAATTTTCCAGCAT
3' ss Score
9
5' ss Seq
TAGGTAGAG
5' ss Score
3.22
Exon sequences
Seq C1 exon
GTCCAGCTGAAGTGTCAGCAGTTATGAAATTCAGCAGGAGACCAACATGTCCCGACACCTCGGTAGCAGCAAGTCTGTCTACACCTCCTATACCAAGGCACAGGAAGAGTCACAGCCTGGGAAACAA
Seq A exon
CATGATGTGTCAGTTCAGTGTGGTGGAGAGCAAAAGCGCCACTTTCCCGACGGAGAGGCCGCGCCACCTCCTGGATGACAGCGTCCTGGAGTCACAGAGCCCGACCCGCAGCGACATGCTGAACTCACTTTTCACTAATGGCATCTCCATAG
Seq C2 exon
ATAGCAGTGAAAGCTCGGAATTTAGTGAGGAGCAGTCATCAGGGCTTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000906_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.581 A=0.423 C2=0.556
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTGTCAGCAGTTATGAAATTCAGC
R:
CTTTCAAGCCCTGATGACTGCT
Band lengths:
170-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]