DreEX6009075 @ danRer10
Exon Skipping
Gene
ENSDARG00000102152 | FO834898.1
Description
NA
Coordinates
chr5:4269223-4274426:-
Coord C1 exon
chr5:4274300-4274426
Coord A exon
chr5:4270600-4270751
Coord C2 exon
chr5:4269223-4269271
Length
152 bp
Sequences
Splice sites
3' ss Seq
TGTTTCTGTCTCTCCTTCAGCAT
3' ss Score
10.71
5' ss Seq
TAGGTATCA
5' ss Score
3.86
Exon sequences
Seq C1 exon
GTCCGTCTGAAGTGTCTCTCTCGATGAGATATAACCGTCGGCCCACCTGTCCTGATGCCACTGTTGGGGTCCACATGCACACCCCTCCACCCTCCCGCCACCGCAAGAGCCACAGCCTTGGGAATGC
Seq A exon
CATGATGTGGCATTTCGGTGTGGTGGAGAGTAAAAGTGCCACATTTCCCACAGAGAAACCACGCCACCTGCTGGACGACAGCTTCCTGGAGTCCCAGAGTCCAGCCCGAACCCATCCGCACAGCTCCTCTGTGTCCAACGGCATCTCTATAG
Seq C2 exon
GCAGCAGTCAGAGTTCATTCTGTGATGATCTTTCTCCAGGAGTCGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102152-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.814 A=0.654 C2=0.059
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTCTGAAGTGTCTCTCTCG
R:
TCTCGACTCCTGGAGAAAGATCA
Band lengths:
173-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]