BtaEX0029613 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000023843 | RALGPS1
Description
Bos taurus Ral GEF with PH domain and SH3 binding motif 1 (RALGPS1), mRNA. [Source:RefSeq mRNA;Acc:NM_001193100]
Coordinates
chr11:97950839-97966749:+
Coord C1 exon
chr11:97950839-97950965
Coord A exon
chr11:97952221-97952378
Coord C2 exon
chr11:97966666-97966749
Length
158 bp
Sequences
Splice sites
3' ss Seq
TCTTCCTTTCCATTTTCCAGTAT
3' ss Score
8.66
5' ss Seq
TCGGTAAGC
5' ss Score
9.86
Exon sequences
Seq C1 exon
GCCCATCCAGTGGCTCCAGTTCCGCAAGGTTCAGCCGGCGGCCCACCTGTCCGGACGCCTCTGTGGCCGGCAGCATCCCCACACCCCCGGTCCCGAGACACAGGAAGAGCCACAGCCTGGGCAACAA
Seq A exon
TATGATGTGTCAGTTGAGTGTAGTTGAGAGTAAAAGCGCGACATTCCCGTCGGAGAAAGCGAGGCACCTGCTGGATGACAGTGTCCTAGAGCCCCGCAGCCCCCGCAGGGGCCTCGCCCTTGCCTCCTCCTCCGCCGTCACCAACGGACTCTCCCTCG
Seq C2 exon
CAGGGGACGTCTCTATGCCACGCTGGGGCCCAACTGGCGCGTTCCAGTCCGGAATTCTCCCAGAACCCGGAGCTGCGTCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023843_MULTIEX1-1/3=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.907 A=0.537 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCAGTGGCTCCAGTTCC
R:
TAGACGCAGCTCCGGGTTC
Band lengths:
205-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development