RnoEX0073778 @ rn6
Exon Skipping
Gene
ENSRNOG00000016910 | Ralgps1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:RGD Symbol;Acc:2319500]
Coordinates
chr3:12191723-12203359:-
Coord C1 exon
chr3:12203233-12203359
Coord A exon
chr3:12202101-12202258
Coord C2 exon
chr3:12191723-12191806
Length
158 bp
Sequences
Splice sites
3' ss Seq
TCTTCCTCTCCGTTTTCCAGTCT
3' ss Score
9.27
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
Exon sequences
Seq C1 exon
GCCCCTCTGCCGGCTCCAGCTCAGCCAGGTTCCGCCGGAGGCCCACCTGTCCAGATGCATCTGTGGCCGGCAGCCTCCCCACACCGCCAGTCCCCAGACACAGGAAGAGCCACAGTCTGGGCAACAA
Seq A exon
TCTGATGTGTCAGTTGAGTGTAGTTGACAGTAAGAGTGCCACATTCCCATCGGAGAAGGCCAGGCATCTGCTGGACGACAGTGTCCTAGAGTCCCGCAGCCCCCGCAGGGGCCTCACCCACACCTCCTCTACCGCCATCACCAACGGACTCTCCCTAG
Seq C2 exon
CAGGGGACGTCTTTATGCCACGCTGGGGCCTAACTGGCGGGTTCCAGTTCGGAATTCTCCCAGAACTCGGAGCTGTGTCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016910_MULTIEX1-1/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.884 A=0.704 C2=0.172
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGCCGGCTCCAGCTC
R:
AGACACAGCTCCGAGTTCTGG
Band lengths:
203-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]