RnoINT0123949 @ rn6
Intron Retention
Gene
ENSRNOG00000016910 | Ralgps1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:RGD Symbol;Acc:2319500]
Coordinates
chr3:12191723-12200118:-
Coord C1 exon
chr3:12200067-12200118
Coord A exon
chr3:12191807-12200066
Coord C2 exon
chr3:12191723-12191806
Length
8260 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
GTACTCCCTTTCCTCTGAAGCAG
3' ss Score
5.99
Exon sequences
Seq C1 exon
GCAGTAGTGAGAGCTCAGAGTTTAGTGAAGAAATGTCTGCAGGGCTGGAAAG
Seq A exon
GTGAGTGTGGCCTCAGCAAGGCCTCTCAGGGCCCAGGGAGCTGGAGTCAGGGGCCCCTGCCCCACCCATACATTACATATGCATGATTACACGGTCACACCTCTGTGTGTACACATTAATCTCACAGACATGCACACAGGTGGACACATTCATACTTCACTTATACACTTATAACATTTGTGAATGTATACACAGACTTAGAGAGTGCTCTCTTCCTGCTCCCTCCCTTGTTTTGTCAGCTGACACTCAGAGCACTGGGTCCAAGCTGCTAGAGACGTGGGAGCCTACTAGACCTGCAATGAGCCCTGGACCTCTAAGAGAGTCCCCTTGGAAGTCTTGAGATGTGCATGGGGCTCCACCTAGTGATAGCTGAGAGTATTGCACCAGTGCAGCCTCAGGCCTGGACCAGTTTGAACACTACTGCCTTGTTGGTTGTGATTCCCATCAGCCTGTCTGTCCCAAGTATCCACATTCCCATCAGCTTCTCATCAGGAATTCACCTGCAGCATGTACTCCAGGTCCAAATACTTCTTGGGTCACCATCAGGAATCCAGGAAGTCTTGGCACCTTGGTGACTAGAGGTCTGAGTGATGGAAAAGGTCCCCAAGGTGCAGGCTTCCGTTGTCCTTCAGGATGGTCCTTCCACTAGTGCCTAGGGGACTACCTGTATTCTTACAAGTACACATGCACAAAGTGATAGAGCCTTATGTGTACATGTGTACAACTATACTGTCTATCTATAGACGTGGCTGTGGTTACAGTCTTATGTGTACATATGCACATAGTTACAGCCCTCACACATGTTCACACATTTACATGTACGTACACAATGCTTATACCCATTACATATGCACAATCACATTGTCACACCTCTGTGTGCATACACTAAACACAGGTCTCACACATATGCATGCACACAAGCAGACACATCCTTAATTGATTCATATACTCCTGCTGATGCATGTGGTATGCATTACACCACTAAGAGCATACACACATGCACCAGTGCATGCGCACACTCCTTTTCTGAAGCTAAAGCTTCAGTCCCTGTAATTGCAAAGTGCCCAGAAGAAATCATCCTACCCGCACACTTCCCACAGCGCAGAGAGGCTTGTTGGTGGCCCAGGCCGAGCGTCCCCTGTGCACAGGCTCTGTCTGGGCACAGCAGCCATGCATAGACTGCCCGCAGCCTGTGCACTCCCCCATAGCTTTGAAAGGAGAACCCCACAGGCCCCACGGGACAGACTCCAAAACTCTTGGTCTAGGTGGGAATTCCTGGGGACACCCTGTAAAGAAGGCCACAAGCAATGTAGCACCTCCTCTGGCCACTCTGGTGGCACATTGTGGCATGGTGCCAAGACGCACGGCAGCAGACCTGTATGTCCCCTCCGTTGTCCGTCCTTTCACTCATCCATCCTCCTCACTCATCAGTCACTCGGTAGCTGCTTAGTTAGCACTGCTGCCTGCACAGGAGCCATGCAGGTAGGCTCTGTAGGTCCTGTTAGTGCTGACTGCAAGTGGAGCCAGCAGGAAAGAGGGTGGCAAGGGGGCATTCCTTGCCCAATGGAAATGATGTCACATGCCGTGATGGCCACTGCAGGCAGCAGTATTTTGTATGGTCTAGGTCACTGAATGTCTGTAGCAGATGCTCTCAAGTGAACTGTCCTCTGAGCACCGGCCTCCTTCTGGCTCTTCTATGCATATGCCCAGGCCTAGAACAGTCCTGCGCCCAGCAGCCTTTCCTCTGCTCTGCACAGAGTGGGTCTTGGCCCCCTGTTTCTTGACTGAGGAGATATCAGTGGGGCTATGATTGCATCTCATCAGAACCCAGTCCCACACAGGCTTCTGGGCTCTGCAGACTGGGCACACAGAAGAGCACCACTCTGCCTCTTCCCAGCTCAGTCACCGTCTTGTCATTTCCTGAGCCCCCTTCATTCTAACCCCCAGGCACCCCACCGTGTACTCCCAGGTCTCCTCCAGACCAATGCTCTTCCTCTCTAGAGAGGACTGGATTCTAGGTGTCCCCCTGGCTGGTCCCAGAGGCCAGCATCTGCCAGAAGGAGCCTCCCTACCAGATCCACAGATACTGTAAGGTGTACAGCATGCTAGAACAAAGGCAGAAGATACGGGACAAGGGTGCAGAAAGGGACTGGGCTCCTTCAAAGGAATGAAGGTGTGAAGAGGAATGGGGTGTGGCTAGTGTGTGATGGAGTCCAGAAACTATAGTCTTTAGATGGTTAGCCTCTGACCCATAGCTCCCCAAGCCCTGGTCGTGAGCTCTACCCAAGCCAGGTGGAAACACAGCCAGACACCAATGCAAAAGGCAGAGAAACACCAGAGTCGGGAGGAAAGTGAGGGTGTGCCCAATCTTCTGTGATTTTATCAGACAGCCCTGGCCTGCAGGGGCGAAGGCAGAAGGAAAGTCTCACTGTCCGTGCCACTTCCCTGAGGAGAGGGCCCTGCAGGCTTTATGTATAGCACAGCAGTGCTAAATGGACTGGAGAATAGGGTTGGAGGTGGGCACCAGGCCAGGTTCTAGCCAGCCTCAGGCCCTAGAGACCAGCCAGCCTCAGGGCTTGGCCAATGGCCACTTTTATACTTAGATTGAAAGGCAAGTTTGGACCCTAAGGTGAAAACAGGTATCACCCTTAGGTCCAAAGTCTTTTTAAAAAGATTTTGAAAGGAGAAATGAGGTGGGTTATGGAGGTGAATAGAGACCGAAATGGAAACATGCAGCACCCTTGGCCTTGGTTATCTCTGCTGCACAGGATTGCCACCCTTGTATTCTGTGAACCTCACCAGTGTTAGTCTGTCTTTTTACTCAGAAAAGTAATTGGCATTTGGCATTCCTAAAGATGTCATCAGAAATGATCACTGATTGTTTCTGAAGAAGTGACAAAGTAAGTGTCAGAGTTTATCACAAATCCTCCCCAACCCTCTTCCCAGGCAGACATTGCCTGGAAGGGGAGGTGGGCAGTGGGGGTGGGCAGTGGTGAGCAGTAGCCGACTAGGAGAAAAAGACCCTCCCCTCGAGGAAGGGGCAGCTCTCTCTACAGTAGAGGGTTGTCTTCCTCCCTGCAGAGGGGAAGGGGCACAGAGGTTGCTGTGCATCATCCAGTGCACAGTGTTGTCCAGTGGGGTAACCTGCATCAGCTGTAAGTTCAGGCAGCTTCTCCAAGAGTTGGTAGTTAACAGGCTTGAAGGAGTTTGCTGAAGCGAACCCTGATGAGCCTTTGTGATGGTCCTGGGGCATGAGGATACAAAGTGGGTTCTAGGTTATGACCTGGGGTGGGAAAGGTAGCTGTGAATGCTCAGGGTTTCTGGGAGACTTCTACAGGCTATATTCTGCTATCTTGAAAGCAGGGAGTCTAATGTCAGAGCCTAAGTCTAAGTCTTAGACTTATCTGAGTCCGAGTCCCTTAGCTGCGCAGTAGAGGTACACATGCTCAACCCTTAGCCTGAGTGTAGAGCTGCTGCAGGAGGCATCGGCCTGGGCTCTCAGCAGTGCCGTAGTGGGTGCTTCTGCCCAACAAGAAAGCTACCAGAGACAAGGCTAGAATGTCAAGCACACCTCAGGTTGCCGTTCATAGACTGTATGGACTGGAATGAAAGCAGTTTCCACCAACCACTGCTGGCTTCTATGGTAGCACTAGTCAGGGGAGGAGGATCCTAGGAAGGTGGTTGATACAGTCTCTGTTCTGGGTGAGGTTTCCTGTTGGTCTTGGTGAGCGCAATCAGCCACCATTCTTAACAAGAGCAGCCGACAAGGGGAGTCATGGTAGCAAGAATGCCAGGTCTGCAGCCCAAAATGGTTTCAGACATGCATCCTTCCTTATGGTCAGAGGACTCTAGGAGATGTGTCAAGTCTCCCAAATCCCAAGTTTTGCAGTATTTGGAGAGAATTGGGCCCAGCTCAAGAGCAAGTGATTCCCTCTACTGTAGCCTACCTGTGTGAGTGACAAAACTCAAAGCCCAGGATCTCAGCCCTCATTAGGGCTCCCTGACTTCTGGCTTCTGTAGGTTTGCCCATATGCATGGATTGAGCTTCCCTGCCCAGGCTTACAGGGTGGCAGCCCGGTTGATTGATTTGCCAAGCTAATTATATGGTTCTCTGAAGACACCATATCTTGCTTTGCTTCTTTAGAGGTGAGTAAGACTCCTGGTAGACTCCTCTGGAGAAGACTAGGCAAAGGGGTCTGGGCCTGGAGCTAGACCCTGTCCTTGGCTGTGTGATCAAGGCTGGGTCCTGTCAGTCAGCAGCTGCTTCATGGGAGCCCCCAGCTTCTTGTTCTGACTCCTTCAGAGCCAGTCTAGAAATGGATTGGCCATCCTTCCATCTGCCTGTCCTTCCTACTGCCTCTCTGGGGTGCCTGCTGGTCCCACTGCCTCCCATGTTTCTGAACATCTCAGCACACAGAGGGTATTAGGTGCCTCACAGTGCCTAGGATCGTGTGGTGGTTTTACCCAGCCACCAAGCCGGATTTCTAGCCTGACCTAAGTCCTGATGGCCAGGAGAGAAATCTGGCTTCGGTTTACACTCAGGAAAACATGCATTGTTTTACTAGTATGGTTTCTAGGCACCATTTAGTGACTCCAGGACATTACCCAAGAAGGGCATGTGCACAAGGAGAGCGGAGGTCCTTCAGATGGAGCTACAAGAATGGCTCTCCCGGGGCTCCTCAGGGGTCAGGCTGGCATTTCCTGCCCACAAATGAGAGAGACTCACCTGTATGTGACCCAGTGTGACTAGCAGCTTCTCTGGGCCTGCCAGGGAAGCCAACGTGACTGGTGCAGGAATCTCATGGGCCTTCCACGCAGCACTCCCAGTGCGGTTTTGAGAATTTGAGACACGAGAGTAGCAGGTATAGGAATATGACTTTTTGCTAGGACCAAGATTCCAAGGGCCTAGATATGGTTGTCATCTATGATGTCTCCTGTTCTCCACCTCCTATATGAGCAGCTGCCTTATGAATTTCAACTATGGGACACCAACAATCTGGTGCAAATCTAGGAACCAATGCCTTGTTCTGCCCAGGTGTTCTTGAGGCCGGTGGTACAGGTTCCTTCTACCTGGGCTTCCTCTTCCAGTGTTGTGGCCTTGGGTAAAGTGAGTGCCTACCTTGTAGCGCTATACATGAGGTTAAATGAGACAGTGAATACTGCTGAGCACATTGCCTGCCCCACCATCTCCTCCTCACTCCACCATCCTCTCCACCTCCTCCTCGACAGCCCCAGCAGTGCCATCGTCTCATCTAGTCACCATCATCGTCATTGTCATTGTCTTATGAGCCCTGTGGGGTAAGCTGTTCTGTTTGGTTGCTTGCCTACATCTTCCCTAGAGCAAATGTCCCGTGAGCCTCTGGTCTGGGATACCTCAGATCCACCTGAAGTGGAGGGGCTCTGCGTTCAGCTACATGTTCTCAGAATGACTCTAGGAGATTCCTGTGGCTCTGAAGTTGGGGCCCCATGGTTTGGGAGGCTCATTAAATACTATTGTCCATACGTTCTGCATTTTGTGGTATTTTAGGGCAGTCGGGAGGTGCCAGGCTGCCCAGCTCCGGGATGGAAGATCCTGGCTGCTCCAAGTTGACACAAGCCTCCTCCCCCAGTTCATGGGGAGAGGATAGATACTGCCCCGACTCTCTTCTAAGGGGTGGGAAAGGCCACCACTGTGCTGCCCTTTCACACCTGGGATTGCCAAGTGGTTCCAAGGACAGGCCGTGGTGTTCACCCTCCCTGTGGGACAGTGAGGCCCTTCACCCCATGTTGGAAGCAGGCCTTCTCTGTGGACACTTGCATCTCCCATCTCAACAGCAGGCCAGCATCTTCTCTGACTTCAGTGTCTTCATCTTACGTAGGCGTGAGGGCAGCATCCCTTCTGTAGGGTGGGCGGGTGTGTTCTCCAAAGCGTATGGATGGCACATTGTAAGTATCTGACAGGACAGCGACACAGAAGTGCTGGGCAGCCCCTTGCAGAGCACAGAACTGAGAAGTGCCCCACCCGATCTGAGAAGATCCTCAGACCTAAGAATTTCCTGGCCGTTTAGCCTCATGTACATGGACACAGACATAGCTGTGGGAGCTGTGACACTCAAAATGGCAACATGGAATGCTAGCAAGGCCTGACACAGAATTTAGGCATGGACCCAGCGCCCAGAGTCGGTCCCTGCCACTCTCTGCTGTAAAAGTCCTGTCTCCTGGCATAGCGAGGGGCTTGGGCTGCAGTCACGCAGACCTTTACTCAAATCTTGGTTGATGAGGCTTATACCTTGGACAAATAGATCCTCATTGTGTGCTGAGCCTCAGTTTCTCCTTTTGGGAAGGATAGTATAGTGGTGCTTGGACAAGCACAGGAAGGAATATAGTGCAGTTTGGACTAGCACAGTGAGAGTGAACACAGAGGCCTGGTGTGCATGAGCGTACACCACCTTAGCCTCTTTGCTCTGTGTGACCGCAGTGAGTGAGGCAGCTCTGTCTCTGTTCATGCCCAGTCCCTCACACTGGACTCCCCTGGAAAGGGCCTGAGTGCTGGCTGCCTACCAGCCTAGACTGATTGGAAGAGATGGATTTCAGGCTGCTCTCTGACAGATGTCCATTCTAGCAACATCTGTCAAAGATGCAGCCCCAGGTGGTCTCACAGAATGAGCAGTGCCTCCTGCTTGCAACCTTGGCAACTTCGGACAGTCCTAACTTCCAACCACCATAAAGCAACAGGGAGAAGACCTTCAAGAGTCTGGCGGAGGGAAAGCTACCACTCCAGGCAGTAGTCCTGAGGAGCGGAGGAAGAGGCATATCTTAAGCACAGAGAGCTACAGAGGACAGCACTTCAGAAAATTCTGTGGTCAGAGCTGGCTCTGAAATTCCTGCCAGTGGCTGGGGAGGACAGCCACTTAGGAGAGCAGCTGTTCAACAAGGACTGGGAGCTGCTTTGGTTTGGGGCTGGACGTGTGTCGGGGTCAGGAAGTGGTAATGTCTACATGTTCCACCCACTGGCAATTACAGCAGAGGCACAGGTCTCAAGGAAGACTGAATCGGCATGTCCCCAGCCTGCTGTGGATGCAGCAGAGCAGAGTCAGCCCGTGACTACCCAGAGACCAGCTGCTGTGAGGACCTAGGTTAACCGGTGCTTAAAAAGGAGGGGCTGAAGAACAGAAAAGGAGGATCCTGGGGCCACCAACACAGCTGACCAGCCCTGAACTTGGGCTCCAAGATGGCCATCAGAAATGTCTTCTTAGTTGGAAGACAGACGCCCAGTCAAGTGTGACACTCATGGCTTCAGGAAGAGAGGCTGTCCTCAGGCCACACACACTAGAGTCACTGGCAATAAAGTCACAGCCTGGGCCAGCTATGAACAACAGAGACCACATTTAGACAAGGAGAAACTTCAATCTGCTTTATACAGACAGTTCTGTCATCCACTGGCCATCAGGCAGAGAAGCTCTAGGTGGGGACAGAGGTTATACCTCAGAGCCAGGCAAGGACAGGGCAAGGCAGTGCCTGCCCCTCACAACAAAGAAGTGGAACTGAAGTGGCACACTCCCCTGATTCAGGAGCAGGGAAGAGAGAAGCCAGGCCAAGCCCACAAGGAGGCCCTGGAATCAGAGCTCTTGGAGGCCATTAAGTTCCAGCATGGGCTGGAGAGATAGCTCAGTGGTTAAGAGATCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACACCCATCTGTAATGAGATCTGGTGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTCATATATAATAAATAAATCTTTTTTTAAAAAAAAGTTCCAGAGGACACTGGAGCCAGCAAAGAGCCAGTTCAGAAGTGAAGTGTAGCAACGGGATCCAGAAACATCCTGGTGAATGCCACTCCATGTGACCTGGCCAGATGTGCAGGACTGTTCACCATTCCATGCTTCTATCTTGGAACCTGTGGACAACATGGCATTTCTGTTAAACAGCTCACCTCGGATTCACATTGGAGAATCCAGGAGAAGGGCGAACAGTCAAAATGTTCATGAAATTGTCCAGTGAGACCCTGTGCTTTCCTAGCTGGAGACTTAGTGGGACAAGTTTTCCCTGGCCAGGTGGCTCCAGATCTGTCCCAGTTGTGCTGTAGTGGGAGCAAGGACCCAAGGAGGAAGAGGGGAGGGGCTGGGCTGACCTACACTGTCTGGGATGCTCTTGACGCCGCAAGGATCAGCTGGTTTTTCCAGACTGACTAAAATGTACTCCCTTTCCTCTGAAG
Seq C2 exon
CAGGGGACGTCTTTATGCCACGCTGGGGCCTAACTGGCGGGTTCCAGTTCGGAATTCTCCCAGAACTCGGAGCTGTGTCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016910:ENSRNOT00000022755:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.611 A=NA C2=0.172
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]