GgaINT0124700 @ galGal3
Intron Retention
Gene
ENSGALG00000000906 | RALGPS1
Description
NA
Coordinates
chr17:11084648-11085068:+
Coord C1 exon
chr17:11084648-11084699
Coord A exon
chr17:11084700-11084987
Coord C2 exon
chr17:11084988-11085068
Length
288 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
ATATTTACATGTGCAAACAGGGG
3' ss Score
6.06
Exon sequences
Seq C1 exon
ATAGCAGTGAAAGCTCGGAATTTAGTGAGGAGCAGTCATCAGGGCTTGAAAG
Seq A exon
GTGAGTTAATTTTCATTTACACTCACTGAGCACTAACCTGATTTAGCACTAAGAGATTTAGAGAAATTCCTGAATGATCCCTATCACAGATAAGCCCTAAATCATTGGTTATTTTTGTTTTTGTTATTATCACTGAAATTTAAAAAATGGAAAACTCTAGAATAAAACGCTGTAATGTTGTTTTTTCTTTTCATGGATGTGAAAAGATCTCTTTCATGTTTACCAGAGCCTAATTGTTGAAATCTCAGACTAGATTTTTACTCATCAGATATTTACATGTGCAAACAG
Seq C2 exon
GGGTCGTTTGTATGCCACGCTGGGGCCAAATTGGAGGGTACCAATCCGGAATTCTCCCAGGAGTCGAAGCTGTGTCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000906:ENSGALT00000001330:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.556 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAGCAGTGAAAGCTCGGAAT
R:
TGTAGACACAGCTTCGACTCCT
Band lengths:
132-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]