BtaINT0122033 @ bosTau6
Intron Retention
Gene
ENSBTAG00000023843 | RALGPS1
Description
Bos taurus Ral GEF with PH domain and SH3 binding motif 1 (RALGPS1), mRNA. [Source:RefSeq mRNA;Acc:NM_001193100]
Coordinates
chr11:97954519-97968156:+
Coord C1 exon
chr11:97954519-97954570
Coord A exon
chr11:97954571-97968050
Coord C2 exon
chr11:97968051-97968156
Length
13480 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
GTTCTCCCCCCACTGCCCAGCCC
3' ss Score
4.93
Exon sequences
Seq C1 exon
GCAGTAGTGAGAGCTCAGAGTTTAGTGAAGAGATGTCTTCAGGGCTGGAAAG
Seq A exon
GTGAGTGTGGCCTGGGCTGGGCCTCCCTCCCGGGGGAGTCGCTCAGGGGGGGCCCAGGGAGCTGGAGACCAGCCCCACCCTCCTCACCCAGCCTGTCGGGGGCTGCCCCATGGCTCCATAGGTCAGCGCAGCCCAGGGGCAGGGAGGCTGCCCAAACAGGATGGGCGTGGGGTGGTGGGTCCCGCCCCTTGCTCTGGCAGGACCCCTCATCCTCGGGTCCAGAGTTGTCCCAGGAGCCTCTCCCTCAGGCCGAGCTGCCAAGGAGACCTCCGAGCACAGATACGGTCTGAGATGTGGGTTCTCGAAAGCAGAAGCCTGACAAATGGGTCTGGAGATGGACATGTGGCTCCGCCTGGTGGGGTCTGAGAGCATTGCACCCCTCTGGCCACGGGCTGATACCCACCCTCCTGGGCGCTGGTGAGCCAAGGGGACTCTGCCCAAGGTTCCCTGCAGCCAGTCCGTCCACCCCAGGAAGTCCTCCCTGTGCCTCCCTCCTCTACATGCTGGCACTTTCTCTGTGCCATGCACCAGGTGGGCTCTGGGAAGACAGGGACCCTGGGAACAGGGAGCTCCTGCAACCTTGGCACCGCCGATGGTGACGGGCATTGTGGGGACTCAAGTTCTTGGGAGAGCGGGGGGCATCCAGTGACACAGAGGTATGCTTGCATCGTCCTGGAAAGTAGCCCCTCCTCTAGCCTGTGTACACAGGGGTCCACATGCACAGACAGGCACACACAGGCACACCCTCAGTTATACACAGCCACACCCACGCCCCTCCCGTGGTGCTCAGCCCCCACAATCATAAATGGTCAGAGAGGAGGTGCAGCCCACTGGCGCAGGGCAGGGGCACAGGGCAGAGGGATGGGATACGGGGACAGTGAGCTTTGTTGAGTGCTCCCCATGTGCCAGGCGCTGTCTTGGTCTCTCCCAGTCCTCAAGCCCTCCGGCACGGGGGTTAGCTGTAAGATGTCCCCGTTTCATATCTGTGGACAGCAAGGCGCAGACAGGTGGCGTGGTCCTGCCTCACCCACCCCTGCGGGGCAGAGCTGACCCACGTCCACCTCCCCCAACTGCAGGACCCACCTGGTCATCACCATGCCTCATCCAGAGCCTCTGTGACACTGCAGGGACTGGCCCCACGTCAGTCAGCCTGTCTGTCTGTCCTGGTGATACCCTAGGTGGGTGGCTGGGTTGGGGGAGGAGCTCCTCTTTCTGTCCCTCCCCAGGCCTCCTGGAGGGACATTTGCTGGGCTCTGATTTGGGGAGCATAGGCCCCCTCTCTGTGGGCCCGCTGCCCTCTCTCTGCCCACCCCAGCGGCGGGGCGAGAGCCAGACAGATAGCAGGCAGACATCAGATCTGACTGGCGGAAGTTTGACTCTTCTCAGCGCCAGTCAGGGGACTCCTGGGGCAACCCAGCGTCTCCCCAACCACACACAAGCCAACGAGGCGACAGTTATCCTGAATAGCACCCAGACCTGGACCTGCTCATGGCTCATTCATCCCTTCGGTCATTTACCCGTTCACTCATTCATCCCTTTATTTACTCATCCATTCATCTGTTCATTCATTCACTCCTCCATTCCTTCATTCATTCCTTCATTCACTCCTCCATTTGCTCACTCATTCACTCATCTGTTCTTTCCTTCGCTCACTCATTCATTCAAAGCTGTGTGTTAAGCAGGTGCTCCCTGCCAGACACCTCACTAGTCTCTGAGGGTGGCGGACACGGTTCCTGCTGAGCCCCCACGACTGAGATGGGAGCTGCCAGGGAGGAAGGGGGTGAGAGAATTCCTGCCTCAGGGACATAGTGCCGTGTTCCACTCAGAGGGGAACTCCACACGCTTTGGTGTTTCGCTTCTTTCTCTTCCACTTGGGATTTAGCGGTAGATTCAACTTAGAGCTTAGCGGTGGATTGACTCTGCATCTGAGTGTCTCTAATAGGTCATTTTGGAGAGCTCCCTGGCAAGCACTGTCACCCACGCAGCCCGCTGTGCAGATGCTCAGCCTGCCTCCAGGGCCCTCAGAACAGCACCCCACCCCCATTTCTCATCTACTTGGGACCCCGCTCTCAGTCCAGCCCCTCCTTCCTGAGGGGAACAGGAGACCACCTGCTTTAGAGATTCAAGGTGACCCTGATGATCCAGACACCAGGTACCCCCCCACCCCCCGTGGCCCAGCCTCCAGCCTCCACTGCTGTCCTGCACTGGCCTCTTCTCATGTCCCCAAGAAAGAGTCCACTCCCTCAAAAGCATGTGAACATTCGAGACTTTCTTAAAGACCCCACGGGAGAGTTGGAGAAGCTTTACCTCACCTTCGAAATCTTTGCAAAACATTGCTCTTTCTCTCACAGTGCAGTGACCACAAGTTCCCCTGGGCTCTGCCTACCTGGAGCCCAACCCACCAGACCCCCCTCCACCCTGGCCTCCCCCATGCCACTTTGCTCCTGCTCATTGAAGGGGAGCGGATTCCCTCTTCCCCAGGAACCAGACCTCACTCTTCCTGGGCCCAGAGGCCAGCAGGTGCACCCACAGAGCCTCCCCTCCTGGACCCCCGCCTGCTGTTCTCGGCAGACGCTGTAAGAATGCGCTCTCCCTGCATCCTTATACCTGCGTGAGGAGATAGTGACCTCGGAACCAGAGACAAGGGTGCAGGAGAGGGCTGGGCCACAGGGGAAGAGGTCCTAGTTCTCCAGTCCCCAGAGGCAAGGCAGGGGCTGGAGGGGAGGCACCTTGCCCCACAGCCCTGAAACTTACAGGGTACAACCTTCAACTCACTTGCCCACCAGTCCCCCAACCCTAGTGACAAACTTGGCCTTGGCTAGGGAGACACATGGAAGCAGATGGGAGGATGCGTGGCAGGGAGGCCCAGGCCAGTGACCACCCCCCCACCACCAGTACATACCCCTCCATTGGTCTGAGGCCATATCAGTCAGCCTGGAGGCCATGTGAACGGACAGGCAGGATGGTTCTTATTGTCTGGCTAAGGGGGTGGTCATGTGGCCCATTTTGTGAGTGTCTCTCCGGGTTGGGTCACACTCCTGGATATTTCAGCCTCGGGGCCCCAAGGCGCCCTTGGGCGATCCTCTGCAGTCCAGAGCTTGGACTGAAGTGGCCAGTCTTAAAGAGCAGGCGTGTTGGAGCCCCCAGTATCCTGGGGACCCTCTGGGCTGCTCTCTGTGGGAGTGGGCCAGGTGTGGCCAATGGGTCCTGTTCCTGCTGGGCCTGTGGAATGGGGGTTCAAGGGTCACTTCCGAGCTCTGCTCACCTCCTGTCCCTCATCCAGCTCAGCCTCAGCGAGTCACAGGCTTGGGTGCTGGGGAGGGATGGGAAGAAATGAGAGCCCGGAAGTGGTCAGACCCTGGGTGGTGTGGGTCATTTCTTAGCCCTCAGAGACCCCCAAAGACCCTCCCCTATCGTCAGGGCCCAGAATGAGGACAGAGTGGTGGTCCTGGCTCAGGGAGCTCCAGGGAACCAGAGGCCAGAGAGTCACTGGGGAGGGGGCAAGCGTGGGACCCAGCTTATGTCCCAGACCTGCTGTTCTCTCACCTCAGGCATCCTGGGAGTGGGACAAAGGCGAGAGAGCCCCGCATCACCTCTGCCTTCCCAAGGAGGGAGGGGGCGGCCCTGGAAGGCATTTTCAGCGCAGCAAGTCCTTGATAAATTGAAACTCCATGATGAATTGAAACGTAGGGGCTGTGGACATTGCCCCAGGCTGGCCTCGAGCCAACCTCAGGATCCTCACGAAGGGGAAGGAGAGTGGGATTGTTAGGCAGGCCTGTCCGGAAGGGGTAACAGCTGCTTCTTTGTGCCTGAGTAGAACAAGAGTATCAGCCCAGGAGTTAAACATTTTAAGTGAGGCTTTTAGAGAAAGCAGAGTGGATGACAGGGATGAACACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAAAGTGCATGGGATCATTCATCTTGGTTATCTCTGCTTCTAGAGTTATTGAGTGAGTTTCTTTTATTTTCTTTTTCTGTAGTCTCCAAATTTTCTACAAGTGGTAAATGTTTCTCTTTCACCCAGGAAAAAGTAACATTTAACTTTTTTAAAACAGGACATGATCAGAAAGGCTTATGGGTCACCTTTTAAGGGGTAAAATAGGAAAGCGCGTCACAAAGTTCATTACGAAATACTCAGCCTCCTGTCTCCTCTAGCCTGTGAGGAAGAGCCTTCTCACGGGACGAACTGGCCAAAATACGGGTGGTGGAAAGCCTGGGAGGCAGAGGGGCCCTTGGAAGAAGCCCCCTCTGGAGGGAGAGGGAAAGGGAGCAGGTGAGGAAAGTGCACCGCCCCTCGCCCCCGCCCGGGCCTCCCTCCCAAACCCCGCCCCGGCCTCCCTCCCAAACCCCGCCCCGGCCTCCCTCCCAAACCCCGCCCCGGCCTCCCTCCCAAACCCTGCCCCACCCCGCCCGCCCAAACCCCGCCCCGGCCTCCCTCCCAAACCCCGCCCCACCCCGCCCGCCCGCCCAAACCCCGCCCCGGCCTCCCTCCCAAACCCCGCCCCACCCCGCCCGCCCGCCCAAACCCCGCCCCGGCCTCCCTCCCAAACCCCGCCCCACCCCGCCCGCCCGCCCAAACCCCGCCCCGGCCTCCCTCCCAAACCCCGCCCCACCCTGCCCGCCCGCCCAAACCCCGCCCCGGCCCCACAAACCTCCGCCCCGCCCTCCCAAACCCTGCCTTCTAGGGGAGGGGGAGGCTGCAGCAGGGGGCTGGTCACAGCTCACGGCCAGGGTGGGAGACAGATTTGGTCGATACGCCAAGTGCACAGAAGGTCGGGAAGAGGACATGATGGCAAAGTCTAGCAGGGGGAATCGAGTCAGACGGCGGGTTCAGGGGTGACTTCTGTAGAGATGATGGTTCAGCAGAAGCCCAAGGACACCAAGTGAAAAGGACTAGAGTGGGCCCTCGAGGGCGGGGGTCGAGGGACCTGAGGAGGCTGCGAGGCCTGAGCCATGTCCTGGGAGGAGAGGTGGCCCAGCGATGCTGAGCATCCCTGAGTCTCTGCAGGAGCAGTAGGGCCCGCGATGAACCTGGTCTCTGGAGTTCTGGGTGTGCCTCTGCAGGGGGAGGTCATGGTGGCTTCTGGATGTTGTCAGCCGTGTTGGGGGAGGGGGAGGCTGAGGTCAGGGCTGCTTGCGCTCTCGGTGACCCTGGGCATGTCTCTCAACCTCTCTGAAACTTGGATTCCCCCAACTCTACAGGGAGGATGCTCACAGGAAGATCTGGGCATGTAGGTGCAGTTGCTCCGTCAGGGAACTTACTTTGGGATGTGTATGAACTTCACTCGGTAGGAACCTCTTGTCAGCAAGCAAGCGATCCTGGAGTCTAAGACTGGGTAGGGTGAAGAGAGAGTCCCCCACGTGGCAGTTCAGTCATCCTGGGATGGATGAACTGCAGTGAAGGCAGGTGTCCACATGCCTGCCAGCCTCTAGGGTGACCAAACTGTGGGGAAGGCACTTGTAAGAGGGAGCTGTCGACACTTGGGCCCACAGGTGCTCTGGGGTGTAGAGGAGATTCGATAATGCAGATTCTGCCTCTCTCTAGCCTCTGTACTCTCTTTAGCCTCTGAAATCTCCCAGCATCCTCTGGGAGGTCCCAGGAAAATGGAATCATGGCAGCAGAGCCCCAGGCCTGCCACTCCCAAGGTAGAGCCTTTGAAAACAGTCCTCTCCCTCCTGGAGAAGGTTAGGGGACTCTGGCAGATGCCCTGGGATGGGCCAGGGTTCAGGGGTGCCTCTTGGGCCCCAAACTGCCATGTGTTGGGAAAGGGAGGCAAGGTTCTGGGGGGTGATCCTGGAGGCGAGGGGTTCACTTCGACTGAAGTGCAAGCATAAGGGTGATGTTTCAGGATGACTCTCACCAAGGGCCTCGCTGCCCCACCCCCACCCCACCCCATCCCCCTGTGGCTGAGGCCCAGGAGCCCCACCCCGAGGCTCGTGTCCCTCACCTGCCCACCCCTCAGTCTGGTTTCCCAGGCCCATCCCGCTCTGTGCCTCCATTCTGCTGCTCTGCCTTGGGTGGAAGCCCAGCTGGGTGATGCGCCAAGCTTCTGCTTTTGGTTCCCCCCAAAGGTGCCATCGCTTGCCTTGCTCTCAGCATCAGGCACTGAAGTCTGGCAAGCAAGTCTCCACCCAGGAGCTCAGGCTCCTCTGGGAGAGAAGAGTGGGCACAGCCCCTGACCTTTTGATTGACCCTGTCCTTGGGCCCTGCCAGCTAGCTGCCACGGCTTCCCAGGTAGCTGAGAAATCTCTGCCCACGACCTCTGTGTCCAGCACCTAAAGTCCCTCAGGGTCGGGACCTGCAAGGTGGGCAGGCCCCTCCTTCCATCTCAAGTTACTCTTCTCTGTGCATATCTACTGTGCTCTCCGCTGTGTCTGCAGCCCAGATTTCTAGACCTCTCAGATCACATTAGGGATGATGCCTCTTAGCTTCCAAATTTACATGTTAGAGCTTCACTGAGCTGCAGAGCCTGACTGTCAGCCTCTCCTATCTGATTCCTCATTGCCAGAGTTAAACCTGATTGACCTGGCTTGGATCAGGGGTTGTTCTGTCCCCTTACTTAAGCATCCAGTACAAATACAGCTCCTAGGGACCCACTCAGTGGATCAGGGACACTGCCTAGAGAAGAATTTGACTACCAGGCAGCAAAAGTCCTTTAACAAAAACTACTGGAAGGGAGTCCCAGAGGACTCAGCCTGGACAACAAGTGGGTGACCTTGTGAGCCCCCGACACCGGGGTCGGGGCTGGACCGAGCATGGGGAGGGGGCTGAAGAGCTGCTGGGGATGCCAGCCCACCCGGGCCTCCCCTGCCCGTCTGGGAGCTGCTGATGGGCGTTCATGGTCTCCTAGGCTGGAGCCCCCTCCTCAGGCTGGCACGGGCTCAGGAAGGGCAGGGGTGGCCATGGCTGCGTGGCCTGTGTACTGGTGCTGGGTCTCTGGGGCTCAGCAGCTGATGGAGGAGGCATGCAGGGAAGGGCAGGGAGGCAGTGGTGGGCTTTAGCTGGTTTGCCCAAGCTCGGTTAGTGCCTCCTCGTGGAAAGAAAACCCCAGGGGCCCGGGAACACTGTGACCATCATCAAGGGAGCACGAGGTATCTCATGGTGCCTGTGTGTCGGGGCTCAGCATCTCTGCTTGGTGAGAGTTGCAGAAAGCCTGCAGAGCAGAGAGCCTGCTGCAGATTCCCTCCAGGGGGCTGTTAGCCGGAGGACATGTGTGGTCCTTAGCATGGCTGTGCAGACTCAGGGAGGCAGCTTCCTGCCTGCAGATGAGGATGAGTCATTAGGAAGTGGCCAGGGCCAAGCTCTGGCCCAGTGGGCAAGGGTTTGCTGGTGCAGGTGGACACTGCTGATGGACAGCATCGTGTGGACCCTTCCACAGGACACCTGACCAGGGTCTCTGTATGTAAGATAGAAGAACGGGGGAGGCGGTGTGCTACTTCTGCTAAGACAAGATTACTGAGGCCTCAATGTGATTATTATCCAAGGCTCCTCCCTGCTACCCATTCCTGGACCAGCAACAGGGACTCAGAGCTTTATGAAATCTAACCCCTGAGATACCTAACACCTAGTGTGTGTTGAGGGAAAGCTGCCTTTCAGACCTGTCTTGGCCGCTCTGAATTCTCAGGATACTCTTGGTCCAGACAGGCCCCTGGCTGCTTCCACCTCATTGGCACCTCCCATCTTTCTCTTCCCAGTGTTGTGACCTTGGGCAAGTTACTCCACCTCTCTAAGCCTCAGACTCCTTATCTATAAGGCGGGATAAGAACAGTGCCTGCCCCTCAGTGCTGTGATAAAACAGGATAATGACCCAGGACTGCTTAGCATCTGGTACTCATCATCCCATCATCACCATCATCCCATCATCTTTATCCTCCTCCTCTTCATTGTCATCTTCTTGAACACCCTTTGGAACTGAGGTTCTGCTTGGTTGTGAGCCCACATCTTCCCCCAACCAAACTTCCCATGAGGAAGGTGGCCAACTGCAGGCCTCCACCCCACCAAGATCTGTCCCCAAGAGGGGCCCGTAGAATGGCCTTCCTGAGATGCATTCTGTTCAGCCACTTGTTCCCAGCGTGCTGCTGGAAAAGGTGTCTGTGATTCTAGAGTTGGGAGCTCCCTGTGTCAGTTGGAGAGTCCCATGATTTCTGGAGTTCACTAAATACCTCTGCCCACTGGTTTTGCATTTTCTGGTCCTGAACATTCAAATAACATTCTCAGAGCAGGGATGTGATCAGATGGTCTGGTTCCAGTGGCTGAAGATCCTGGCTCTTCTGTACTAGGCCTAGCCAGAGCCAACCCACCTGTCACAGCCCTCCTCCAGCCTGGCAAGGCTTGCCTTGGGCGGAAAGGCCAGCCACCACCCTGCCTCTAGTCTCCTAAAAGCTGGCCTTGGCAAAAAGTCACCATTCCACTGCCCTTCAAGGCCAGGGTCATTCCCCAGGCTCCAGGCAGAGTGGGCTCTGACCCCCGCCCCCCCAACCCCCCGACTTGGAGCAGCTTGACTGACAGGGGCACTCGGCTTCCTGTGGGAAAGACATCCTCCCTTTGTGAGCACATGTGTCCCCATCCCTAATGACAGGCCAGTAGGTGGCTACCCCTCCTGGAGCCCGTTTCCTCATCTAAGACAGGGTGAGAACAGTGCCCTCTCCCCCCACGGAACTGGGAGGAGCAGGGTGAGAGAGCACTCAGCCATCTCATGGTAAGCAGGTGATCGATGGCAGCTGCTCTTAAGTGCCAGGCAGCCCAAACCACCAGGAGAAGACTGTCGGGGGGTCAATGGACCTGGCAGGTGGCCCCACCCCAGGAGACCCAGGGTCTAAGAATCTGTGGTCATCCCGCCTCTCAGACACTGACAGAGCCCGTTCACCGTGTGCTGTGGCAGAAACCTGCAAGAAGGGTGCCTCTGAGAACAGAAGGCCAGGGAGCCACCCACAGGATGCTGGCTCCAAACACGACCCAGTCCTCCTGGCAAACTCCTCCAAAGGTGACAGCTCAGCCTGGCTCCCACCCTGAAAAGTGTGGAAGGAGCCTGGAGAGTTGGTCAGACCTGGGTTCAAACCCTGGCTTTGAATGTGCCTCAGTTCAGTGTTTTCACATAACTGAGCCTCAGGACCCCGTTCGGCGATGCTAAAACAAAGCTCCCCTGAGATAATCAATGGCCTGATGCATAGCAGCGGTCACTCACTAGTGACTCTCCCACGAGCTGCCCCAGTGACCCCCGGCATCCCTGCACATCCCACCAGTCCACTGCACTCTGGGTCACCTCACTCCTTCAGGAGGAACAGGAGGAAAGACTGCTTAGAAGGCTAAACTGGTTGGAAGATGCAGGTCTTAAAGTAGAAAGAAAAGTGAAGTTGCTCAGACGTGTCCAACTCTTTGTGACTCCATGGAATGTAGCCTTGGGCTCCTCCATCCATGGGAGGACAGAAGTCTTTAAAGCCCTCTATCAATAGTCAGTCCTTCCAGCCATGGATTGTCTCACAAAAGAGGAGAAGAGGCGGCAGCGCCCACCACCACATGGCCCTGTTTTGGAACAGTCCACTGTCGTCATACATTTCCTGGGATGCCAGGAGCAAAGATTCATGAGAAGAAATGTGGAGAAGAAGGGGCCAGAGGATCCAGCTCTGCAAAGGGAGGCTCCATCCTCAACTCCAGAGAGATTAGAGCTCAGAGCAGCAATGCACATCAAACCAGGGGGCATCCTCTGGGCCCAGGAGTGTTGCTGCAGAAAAGTTCACTGTCAGACCCTGCCCTGCCTCATAAGGAATCCTGGCCATGGCTGGGAGAGAGGCAAGCCCGGAGGCAGTCTCTAAGCCCCTGCGCTGCCTGCTCAAGCACAGGGCTGTGACATGCCATGGTGTCACACCCAGTTGTGAAGAAAGAGAGGAGGCACTCTGGCCTGTGGGCCAGGGGTTGAAGGTGCCAGGGCCTCTGAGTGCACGGTGGGGGCGGGGTGGGCCTGCAACCATCATATCATGAGGGTTGGCTGGGGAAAGGGCTGAGACTCATTACGCTTGAGGACTTGGGGGACCGAGCACGTGCTGCAGCTCTTTGTCACCTACAGAGGAGTGGCTGACGGATGAGAAGGACAGGGTCCCAGGGCAGTCGACCTGGATGACCATCAGGCTCCCACCAACCTTGAGCTTGGGCCTCTGGAAAGCAAACCCAAGATTGTCGTCAAGAACTGTTCCTTCTTGAGCAGAGGATGGAGGGGCAGGGAGCAATGCAGCCACCCCTAAGAGGAACCTGAGCTCAGAGATGGTGTGATGCACCTGCGGTGATGAATGAGGACGTCCCCATACCACCCAGGTGTCCAATGCCACAGGGCAACGTGCAGGAACCTGGGACTGGCAGTGGACAATAGAGGGAATAGTTGAAAAGAGAGTGTGGACCTTGTCTGGCTTTATAAATTGAGTTGCATCATTGTTTGGCCAATGGAGGGCTATAGCCCAGGGACAGACTATTAGTGAAACAGTTTAAATAAGATAGGAGTTACCTATTGGGCTTCCCTCATAGCTCAGTTGGTAAAGAACCTACCTGCCAAGCAGGAAATGGGGGATCAATCTCTGGGTTGGGAAGATCGCCTGGAGAAGGGAATGGCAACCACTCCAATATTCTTGGCTGGAAAATCCCATGGACAGAGGACCCTGGTGGGCTGCAGTCCACAGGGTCACAGAGTCAGGCACAACTTAGCAACTAAACAGCAGCAGCAGCAGACCCCTGCAGAGGTCAGGAGAAGACTGAGAACCAGGTAGACACAGGAAGTCATTCTGCTAAGAGAGGAAAGGGCAAAGAGAGAGAGATGGAAGCCTGACCCCCAAATAGGTTCAGCTCCCTACCTGCCCTGGACGCTACACCTTCCCCTGGAAAGGCTCACTGCAGGGGAACTACGGGTGAGAAAGAGGCCAGATGGGAGCCCACGGAGGGTTCTGGAGCACCAACTCTTAGACCCTGAAACGGATCACAGAGCAGGTTTGCTGGGGACCGTCTGGGGCCAGCAAGGAGCCTGTCCGATGGAAGTTCAGTTCAGTTCAGTTCAGTCGCTCAGTCGTGTCTGACTCCTTGTGACCCCATGAATCACAGCACGCCAGGCCTCCCTGTCCATCACCAACTCCTGGAGTTCACTCAAACTCACGTCCATCGAGTCGGTGATGCCATCCAGCCATCTCATCCTCTGTCGTCCCCTTCTCCTCCTGCCCCCAATCCCTCCCAGCATCAGAGTCTTTTCCAATGAGTCAACTCTTCGCATGAGGTGGCCAAAGTACTGGAGTTTCAGCTTTAGCATCATTCCTTCCAAAGAAATCCCAGGGCTGATCTCCTTCAGAATGGACTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAACACCACAGTTCAAAAGCATCAATTCTTCGGCGCTCAGCTTTCTTCACAGTCCAATTCTCACATCCATACATGACTACTGGAAAAACCATAGCCTTGACTAGACGGACCTTTGTTGGCCAAGTAATGTCTCTGCTTTTCAATATGCTATCTAGGTTGGAACGGAGGAATTCAGTAGCACCTGGTAGATACTGATGCTGGTAGATACATGCCCCGCCCCCTCTGCCCTGGACCAACACGCAGGACAGCCCACAGTTCTGTGTCCATAAGTGTACACATTTAATTGGATTGACCATGGAATATTGGGACTTTACAGGCACAACTGAGCGACTTTCACACTCACTCAGTGTTTTCTCTCAACCTCACACTGGGATGAGGGGTGTGCCCAGATTTTAGTCATCCCCTTGTCACTGGAAGAAAGCTGAACACTTAAGGCTGAGGAAGCACTTACCTGGAGACTTGGGGACCCGCACTGATGGAGGCTCCAGGGGTGTTGTGCTCCAGGTGTACCCCGGATGTGTTGCAGTGTGAACGAGGAGGCCAGGGGAGGAGTTGGGGCTGAGGTTTCTGGAGCTCATGACCACATGGTCTGAGATGCCCTCGCCTCTTCCGGAGGGACTCGTTTTCCCAGGCTGTTGCTAAAACTCAGCTCCTTTCCTCTGAAGCAGGGGACGTCTCTATGCCACGCTGGGGCCCAACTGGCGCGTTCCAGTCCGGAATTCTCCCAGAACCCGGAGCTGCGTCTACAGGTACTCATTTACTCATCTGATCATGTACTTGACAAGTAGTTCCAGGGCGCTTGCTGGGCGCCAGGCGCTGTGTTCAAGGCTGCCGACGAGACGGATACAGCCTCTGCCTCGGTCCATGGGGCTGAGACAGAAATGGAATAGAAAATCATGGGTGCCGCTGGTCCAGAGAGGAGGCTAACCTGGAGAAAAGACTGGAAGAGTGATAGGAACTAGCCAGATAAAGGGAAGGGAGGCGTTGGGGTAAGAAGACCCACAGCCTAAGGATAGTCCATGGGGCCAGGAGGCAGGAGGAGCAGGGTGGTTCCAGGAGTGAAGGAGAGTCCAGGTTGTAAGAAGTGAGAGACGGGAGAGGGCGCCGGGTGAGGCCAGAGAGGTGGACCAGAGCCAGGTCCAGCAGGCGGTGAGGAGAGTGGTCGCAGAGGCTCTGGAGGGGTTGCATGAGGGAGGGGGATGGAAGGGGTGAGGGATGGAGAGGGAAGGGAGTGGCAGGACCCAGGTCATCCTGGCTGCGGTGTGCAGAGCGCATGGAAGTCAAGAGTGGACGCAGGGAGGCCAGAGGAGAGGGTCGGGAAGTTGCTCAAAGGATGACCAAGTTCTGCTGTAAGGTGGGGGGTGGGGTGGCTGAGCTGGGCAGTCCTGCATATTTAGGGCATGAGATCAGTGATTCTGGGATGCCGAGGGATAGCAGCTTGGCTTCGGTGGGGCGTTGAAGGAGGTGCCATCCAGGGAGCCAGGGAGCCGAAGCCAGGGCTTCGGAGGGAGGCCTGGACCGGCGCCGCACTGGCCCTCCTCACCTGCAGGTGGCGCCCTAATCCCCATGGCAGAGGCGGGAGAGAGGCGTCCTGAGGCAAAGGTGCGGGGCATGGGGTTTGGGGTCCCCCCATCCCCTTCCCTCCTACTTCCTCACTGCTCCTCCCAAGCTCCTGCCAACACAAGGAGGAGCGGGTGCTGCACGGTCCCAAGATCCGCAGCGGGAGAGGAAGCAGGATGCGGTGTGGGTGACGCTAGGAGCTGGGTTACAGGGAGCGAGCGTGGTCCCCAAGCCTAGAGCTGCTCAGCGCTCAGAAAGACAAGGGCGAGGCACGTTCCGAGCTGTGGGCAAACCCAGAGCCATCTTCCTTCAGGCTCTCTGTGGCCACAGAGCCCTCCCTCCCGGGCCTGGCCCAGCCCTGTTGAGTTCTCAGTCTGTGGTGGCATCCTGGACCTGGCAGTGGGGGGCCTGTTGGCCCCATGGGTGAGAGGGTGCCTGACCCCAGCTCCTCTGGGTGATGTCTGACCCATGTTCTCCCCCCACTGCCCAG
Seq C2 exon
CCCCACCGGTCCATGTATCTGTACACTGGGGAGCTCTGCGGCGACCCCCACCATGGAGGGGCCTCTGAGAAGGAAAACTCTGCTCAAGGAGGGACGGAAGCCCGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023843:ENSBTAT00000061364:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.778 A=NA C2=0.444
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0016924=PH=PU(17.0=52.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development