GgaINT0124701 @ galGal4
Intron Retention
Gene
ENSGALG00000000906 | RALGPS1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:HGNC Symbol;Acc:HGNC:16851]
Coordinates
chr17:10356376-10356821:+
Coord C1 exon
chr17:10356376-10356456
Coord A exon
chr17:10356457-10356715
Coord C2 exon
chr17:10356716-10356821
Length
259 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
GTAATGTTTTGATTCTGTAGCCC
3' ss Score
6
Exon sequences
Seq C1 exon
GGGTCGTTTGTATGCCACGCTGGGGCCAAATTGGAGGGTACCAATCCGGAATTCTCCCAGGAGTCGAAGCTGTGTCTACAG
Seq A exon
GTACAGTTCAGGCCTATCTTGCTCAGCTTATGGTGATGAACTTTCACTTGGACATCTACATTTTCCTAGCCTAGGGTCTTTTGTGTCCAAGAATATCCTTGTATGACCATACCAACTTATGAGTCTTCCTATCCCACTTTTAGAAATTCCTGTCAGTGCTAAAACAGCATCAAAGCCCATTCAGATAAAATTCAGTTTAGGTGTCAATTTAACTAATAATTATATCTGTCTTCCATATGGTAATGTTTTGATTCTGTAG
Seq C2 exon
CCCAACAGGAGCCTGCAGCTGCACACTAGGTAGTTCCATGGGAGTAGTTACCATGGAAGGACCCTTAAGAAGAAAAACATTGCTCAAAGAAGGCAAGAAACCTACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000906:ENSGALT00000001330:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.125
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0016924=PH=PU(17.0=52.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTTTGTATGCCACGCTGG
R:
AGGTTTCTTGCCTTCTTTGAGCA
Band lengths:
181-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]