MmuINT0131363 @ mm10
Intron Retention
Gene
ENSMUSG00000038831 | Ralgps1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:MGI Symbol;Acc:MGI:1922008]
Coordinates
chr2:33145398-33146650:-
Coord C1 exon
chr2:33146570-33146650
Coord A exon
chr2:33145504-33146569
Coord C2 exon
chr2:33145398-33145503
Length
1066 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAC
5' ss Score
7.48
3' ss Seq
AACTGAGAGTCTCCCTTTAGCCC
3' ss Score
-0.41
Exon sequences
Seq C1 exon
GGGACGTCTTTATGCCACGCTGGGACCTAACTGGCGGGTTCCAGTTCGGAATTCTCCCAGAACTCGGAGCTGTGTCTACAG
Seq A exon
GTATACATTTGTTCATTTTCTCATTTGACAGATGGTTTTGGGGTGTATACTGAGGGAAAGGCTCTGTGCCAGATGTATCATAACACTATCTCTGGTGCTAAAAATTGCTCCAGAGAGGTATGGGGCCCTCCGGGAGAGAGGAGGTGACCATCAGAGAAAACAGTGCTAGAAGAATGATGGGAATTGGCCAGGTGACTGGAGAGGGATTCCCAGGGTCAAAGCTCCCAGCCAGCCAGCCGGATGTGGAGTTGTGAGGCAGTAGGAATAGGGGGCTCAGTGAGGGTAAGATCCACTGAGTATAGGAAACCAGAGATGGGTTTCAGAGGCACATCCAACTGGAGCAATGATATTACCTGCCCCTTAAAGGCAGTGGGACCCAGGGAGGTTTTGTGGAGAAATAACTGTGTGGTTGGTGAGGATATGGGGGAGACAGGAATAGAAGCAGGGGCCAGAGACAGCATTGGGCTCTCATCTAAAAGAAGATACAATGGCTTTGGCGGAGAGGTGGGATGACAGCCAGATGTGGTTAGGACCTAGGAACATCCATGGAACTAAGTTGCAGATCATGAATAAGGGAAGAGTCTTTACCAGGATCTGAGCTCACTACTGGCTTGGTGACCAGCTTGGTTAAGCCAGGTGGACATCCAATAAGCAAGAGCACAAAACTCTAAAGCATGGGACAAGACTTAGACATTGTCACCAGGACAATGCCTGATGTCAATGGAGTGGGTGAAAGAAAAGCGAGGAGGAAAGAGGAGCAGGCTGGTAGTGTAGGGCTCCTGCCCCCCTCCCCCTGTACCCTATGACTTTGCACCCTCCTGCTAACATGAGGAGGACCTGCAAGGCATAAACCATAGGCATGAGCACGGCGAGCAGGCTAGGTGGAGAAACTTGGTGAGAGCTTTCTGAGGAAGCTTACCCTACTCTTTCTTTGGTAGCTTTGGCCCAACCCCAAGAGTCCTCTGACTATGGGAACATCATTGGTTCACCTGGGAGGCGCAGTGAGTGGGAAGGTACCAGGTTTCAGCTGCTCTGGGGCTGTATCTAACTGAGAGTCTCCCTTTAG
Seq C2 exon
CCCCACGAGCCCTTGCACCTGTACTGTGGGAAGCTCAGCCACTGTGCCCACTATGGAGGGGCCTCTGAGACGGAAAACCCTGCTCAAGGAAGGCCGGAAGCCTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038831:ENSMUST00000042615:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.180 A=NA C2=0.490
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0016924=PH=PU(17.0=52.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACGTCTTTATGCCACGC
R:
GCTTCCGGCCTTCCTTGAG
Band lengths:
182-1248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types