RnoINT0123950 @ rn6
Intron Retention
Gene
ENSRNOG00000016910 | Ralgps1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:RGD Symbol;Acc:2319500]
Coordinates
chr3:12190594-12191806:-
Coord C1 exon
chr3:12191723-12191806
Coord A exon
chr3:12190700-12191722
Coord C2 exon
chr3:12190594-12190699
Length
1023 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAC
5' ss Score
7.48
3' ss Seq
AACTGAGAGTCTCCCTTCAGCCC
3' ss Score
-0.03
Exon sequences
Seq C1 exon
CAGGGGACGTCTTTATGCCACGCTGGGGCCTAACTGGCGGGTTCCAGTTCGGAATTCTCCCAGAACTCGGAGCTGTGTCTACAG
Seq A exon
GTATACATTTGTTCATTTTCTCATGTGACAGGTGGTTTTGGGGTGTTTACTGAGGGAAAGGCTCTGTGCCAGATATATCATAACACTATCTCTGGTGCTCCAATTGCTCTAGAGAGGTATGGGCCCTCTGGGGGAGAGGAGGGGACACCAGAGGAAATAGTGCTGAAAGAATGATGAAGAGGGACTCACAGGGCCAAAGCTCCCAGCAGGAGAGACCAGGGCTGTGAGGCAATAGGAATAGGCAGCTCAGTGAGAGTAAGATCCCCTGAGTTGTGGGAAACCAGAGAGGAGGTGGGAAGGTGGGCAGAGCCACATCCAGCAGGAGCAAGGATATCACCTGCCCCTTAGACACAGGGGGACCCAGGGAGGTTTAGTGGAGAACTGTGTGCATGGAGAGGACATGGGGGAGGCAGGACTGGAAGCAGGAACCTGAGACAGCATTGGGCCGTCGTCTAAAAGATACAGTAGCTTTGCTTTGGTGGAGAGATGGGATGACAACCAGACATGGTTAGGACCTAGGATCAGAACATCCTTGGAACTGAGTTGCAGGTCACGAGTAAGGGAAGAGACTTCCCCAGGGTCTGACCTCACTCCTGGCTTGGTGACCGGCTTGGTTAAGCCGGGTGCCTGTGGACATCTGATAAACAAGAGCACCACTCTAAAGCATGAGACAAGACTTGAACATTGTCACTGGGACAGCAGGCTGGTAGTGTGGGGCTTCTGTTCCTCCTTCCACTGTACCTTACGACTTTTACACCCTCCTGCTAACATGAGGAGGGCCTGCCAGAGCTGGCTTGAGCATGGGAAGCAGACAGCAGGAAGTGGAGAGCAGGCTAAGGTGGAGAAACTTGGTGAAAGCTTTCTGAGGGAGCTTACCCTACTCTTTCTTTGGTGACTTTGGCCCAACCCCAAGAGTCCTCTGACTATGGGAACATCATAGACTCACCTGGGAGGCACAGTGAGTGGGAAGGTACCAGGTTTCAGCTGCTCTGGGGCCGTATCTAACTGAGAGTCTCCCTTCAG
Seq C2 exon
CCCCACGAGCCCTTGCACCTGTACTGTGGGAAGCTCAGCCACTGTGCCCACTATGGAGGGGCCTCTGAGACGGAAAACCCTGCTCAAGGAAGGCCGGAAGCCTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016910:ENSRNOT00000022755:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.172 A=NA C2=0.528
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0016924=PH=PU(17.0=52.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGGACGTCTTTATGCCAC
R:
CTTCCGGCCTTCCTTGAGC
Band lengths:
184-1207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]