GgaINT0124701 @ galGal3
Intron Retention
Gene
ENSGALG00000000906 | RALGPS1
Description
NA
Coordinates
chr17:11084988-11085433:+
Coord C1 exon
chr17:11084988-11085068
Coord A exon
chr17:11085069-11085327
Coord C2 exon
chr17:11085328-11085433
Length
259 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
GTAATGTTTTGATTCTGTAGCCC
3' ss Score
6
Exon sequences
Seq C1 exon
GGGTCGTTTGTATGCCACGCTGGGGCCAAATTGGAGGGTACCAATCCGGAATTCTCCCAGGAGTCGAAGCTGTGTCTACAG
Seq A exon
GTACAGTTCAGGCCTATCTTGCTCAGCTTATGGTGATGAACTTTCACTTGGACATCTACATTTTCCTAGCCTAGGGTCTTTTGTGTCCAAGAATATCCTTGTATGACCATACCAACTTATGAGTCTTCCTATCCCACTTTTAGAAATTCCTGTCAGTGCTAAAACAGCATCAAAGCCCATTCAGATAAAATTCAGTTTAGGTGTCAATTTAACTAATAATTATATCTGTCTTCCATATGGTAATGTTTTGATTCTGTAG
Seq C2 exon
CCCAACAGGAGCCTGCAGCTGCACACTAGGTAGTTCCATGGGAGTAGTTACCATGGAAGGACCCTTAAGAAGAAAAACATTGCTCAAAGAAGGCAAGAAACCTACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000906:ENSGALT00000001330:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.139
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0016924=PH=PU(17.0=52.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTTTGTATGCCACGCTGG
R:
AGGTTTCTTGCCTTCTTTGAGCA
Band lengths:
181-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]