RnoINT0123947 @ rn6
Intron Retention
Gene
ENSRNOG00000016910 | Ralgps1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:RGD Symbol;Acc:2319500]
Coordinates
chr3:12202101-12203359:-
Coord C1 exon
chr3:12203233-12203359
Coord A exon
chr3:12202259-12203232
Coord C2 exon
chr3:12202101-12202258
Length
974 bp
Sequences
Splice sites
5' ss Seq
CAAGTGGGT
5' ss Score
4.82
3' ss Seq
TCTTCCTCTCCGTTTTCCAGTCT
3' ss Score
9.27
Exon sequences
Seq C1 exon
GCCCCTCTGCCGGCTCCAGCTCAGCCAGGTTCCGCCGGAGGCCCACCTGTCCAGATGCATCTGTGGCCGGCAGCCTCCCCACACCGCCAGTCCCCAGACACAGGAAGAGCCACAGTCTGGGCAACAA
Seq A exon
GTGGGTGACCGAGAAACCCTCTTCCGGGGTGAAGGAAGGTTGGGTCTTTCCCCATCCTCCTTTGGAAGCTCTTGATGTTCTTGGCAGACAAACCCTCCTAAGGCTGGTGTGAACTTGGGAATGAGAGGGGCGACAGGTGCAGTCTGTATGCCACCACCAGGGACCTGGGCTCAGTAGATAGTGAAGAAATGTGCCTAAACCTGGTCTACAGCTCATTTAGGGAGAACTGAGTCCAGCAGACACCAGAGACTATCCGCAAGTCAGCAGTGAATGTCTCAGAGTACCTGCTGGTTCACTGGGACCCACTGCTGGGACACATAGAGGTCCTCAGCATTGCTGGGGAAAGTCATGCCTGTATCCTCTGGGTATTGGTCACAGGTTCCCAAATAAGGGGCACCCTTTGTCCCTTCCCATTCCTCCCTTTCTTCTCTCCTTCCTTGCACCTGCACCCTAGCACTAAGGCACAAATGCCATGCATCTTGGCTGGTCCTTGTGGGGCTCAGAGGCAGGAGCAGGACAAAGTGCTTTGGATCCCTGGGGTCTCCTCTTCTCTAGACATTGCCACATACCCATGGTCACCATCTCACTGAACCATGCAAACCTCTGAGCAGCTTCTGCTGTGCTCACTGTAGGTCTAGCAGCTCTGACTAGGTCACAAAGCTCTGACACTCCTTAGCAGAGCCTACTGACCAGCCTTTCACCTTGGCCTCATCTCACAAGCCTCACCGTCATCCTGGGATACAGGCAGGGCAAGCAGCACTAGTCTCCATTGACAGAGAGAGAAGTAGAGGCTCAGAAAAAGGATGTGACTTGCCCAAGGTCATACCATAAGAAGGGGCTGAGCCTGGTCCACCAATGGGCTCTGGGCAGAGGCGTCTCCAGCAGTAAGTCCCTGGCTCTGGCTTCCGCGGCCAGTGCACCACTGTGCTCCCAGGATAAGGAGCTCTGCTTCTCTCTTCCTCTCCGTTTTCCAG
Seq C2 exon
TCTGATGTGTCAGTTGAGTGTAGTTGACAGTAAGAGTGCCACATTCCCATCGGAGAAGGCCAGGCATCTGCTGGACGACAGTGTCCTAGAGTCCCGCAGCCCCCGCAGGGGCCTCACCCACACCTCCTCTACCGCCATCACCAACGGACTCTCCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016910:ENSRNOT00000022755:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.884 A=NA C2=0.704
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGCCGGCTCCAGCTC
R:
CTAGGGAGAGTCCGTTGGTGA
Band lengths:
281-1255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]