GgaINT0124698 @ galGal3
Intron Retention
Gene
ENSGALG00000000906 | RALGPS1
Description
NA
Coordinates
chr17:11083039-11083999:+
Coord C1 exon
chr17:11083039-11083165
Coord A exon
chr17:11083166-11083847
Coord C2 exon
chr17:11083848-11083999
Length
682 bp
Sequences
Splice sites
5' ss Seq
CAAGTGGGT
5' ss Score
4.82
3' ss Seq
TCCTCTTTCCAATTTTCCAGCAT
3' ss Score
9
Exon sequences
Seq C1 exon
GTCCAGCTGAAGTGTCAGCAGTTATGAAATTCAGCAGGAGACCAACATGTCCCGACACCTCGGTAGCAGCAAGTCTGTCTACACCTCCTATACCAAGGCACAGGAAGAGTCACAGCCTGGGAAACAA
Seq A exon
GTGGGTACTCCAGGTTCCCTCACAGTCAGGCAGTTGCATGCATCACTGAGGTTTAATCTGGCAGCAGAACACTGGTATTTTCTTCTTCCCTTTCCTATACTGCAGGAGCACTTCGGGCTTTGCTATGTATTTTCTAAGTTTTCTCTTGACACTTTGTGTTTTCGCTGGCAGTATTCTCATCGTTCTGGAAAGCTGTGACCTTTTGCACTGTTCTACAAATGAGACACTTTGCTTGCTAAGTATGAGCACCTGCTCTCCAGTTAAGGCGAGCATACCAAATTTCACACTTAATGGGTTAAGGAAAAGTAGTTCATGATTGATGTGTTTGTTCAGCTTAGTGCAAGACCACTGAGCAGTGCCTTAGCTGGGATCTGCTTGTTTTTCTACCTTTGCATCCACTCATGTATACTGTACAGATAGGAGTAAAAAACTTTTTGTAGCTTTCCATCTGCAGAAATACAATGATGGTTACTTTGAAAGGCTGCTGAGGTCTGAAACTTGCTTAGGTAGTCAAGGAGCAGTGTAAGCAGTACCAATTATCTGCTTTCTACATAATAACCTATAGACCTATATTTATGTTCATGGTATGATAAAGCAAACCTGAGTGGAAATATCAGACACAAATGGTTGTTATCAGATGACAAAAGCGGGTTATTGCATTTTCCTCTTTCCAATTTTCCAG
Seq C2 exon
CATGATGTGTCAGTTCAGTGTGGTGGAGAGCAAAAGCGCCACTTTCCCGACGGAGAGGCCGCGCCACCTCCTGGATGACAGCGTCCTGGAGTCACAGAGCCCGACCCGCAGCGACATGCTGAACTCACTTTTCACTAATGGCATCTCCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000906:ENSGALT00000001330:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.581 A=NA C2=0.423
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAGTGTCAGCAGTTATGAAA
R:
TGGAGATGCCATTAGTGAAAAGTGA
Band lengths:
270-952
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]