GgaINT0124698 @ galGal4
Intron Retention
Gene
ENSGALG00000000906 | RALGPS1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:HGNC Symbol;Acc:HGNC:16851]
Coordinates
chr17:10354427-10355387:+
Coord C1 exon
chr17:10354427-10354553
Coord A exon
chr17:10354554-10355235
Coord C2 exon
chr17:10355236-10355387
Length
682 bp
Sequences
Splice sites
5' ss Seq
CAAGTGGGT
5' ss Score
4.82
3' ss Seq
TCCTCTTTCCAATTTTCCAGCAT
3' ss Score
9
Exon sequences
Seq C1 exon
GTCCAGCTGAAGTGTCAGCAGTTATGAAATTCAGCAGGAGACCAACATGTCCCGACACCTCGGTAGCAGCAAGTCTGTCTACACCTCCTATACCAAGGCACAGGAAGAGTCACAGCCTGGGAAACAA
Seq A exon
GTGGGTACTCCAGGTTCCCTCACAGTCAGGCAGTTGCATGCATCACTGAGGTTTAATCTGGCAGCAGAACACTGGTATTTTCTTCTTCCCTTTCCTATACTGCAGGAGCACTTCGGGCTTTGCTATGTATTTTCTAAGTTTTCTCTTGACACTTTGTGTTTTCGCTGGCAGTATTCTCATCGTTCTGGAAAGCTGTGACCTTTTGCACTGTTCTACAAATGAGACACTTTGCTTGCTAAGTATGAGCACCTGCTCTCCAGTTAAGGCGAGCATACCAAATTTCACACTTAATGGGTTAAGGAAAAGTAGTTCATGATTGATGTGTTTGTTCAGCTTAGTGCAAGACCACTGAGCAGTGCCTTAGCTGGGATCTGCTTGTTTTTCTACCTTTGCATCCACTCATGTATACTGTACAGATAGGAGTAAAAAACTTTTTGTAGCTTTCCATCTGCAGAAATACAATGATGGTTACTTTGAAAGGCTGCTGAGGTCTGAAACTTGCTTAGGTAGTCAAGGAGCAGTGTAAGCAGTACCAATTATCTGCTTTCTACATAATAACCTATAGACCTATATTTATGTTCATGGTATGATAAAGCAAACCTGAGTGGAAATATCAGACACAAATGGTTGTTATCAGATGACAAAAGCGGGTTATTGCATTTTCCTCTTTCCAATTTTCCAG
Seq C2 exon
CATGATGTGTCAGTTCAGTGTGGTGGAGAGCAAAAGCGCCACTTTCCCGACGGAGAGGCCGCGCCACCTCCTGGATGACAGCGTCCTGGAGTCACAGAGCCCGACCCGCAGCGACATGCTGAACTCACTTTTCACTAATGGCATCTCCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000906:ENSGALT00000001330:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.581 A=NA C2=0.423
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAGTGTCAGCAGTTATGAAA
R:
TGGAGATGCCATTAGTGAAAAGTGA
Band lengths:
270-952
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]